Gene detail

Detail information of GWHGAAEX016957/evm.TU.scaffold_79.210

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743832753\|ref\|XP_010935066.1\|	0	PREDICTED: uncharacterized protein LOC105055061 [Elaeis guineensis]
trEMBL	tr\|B9HEV9\|B9HEV9_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:EEE90672.2}
TAIR	AT2G25740_1	8.00E-140	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000082	4090942	4102123	+

Transcript Sequence
>GWHTAAEX016957 TTCAAGTATTATGCTAAAATACTATATTTTATGTAATGAACAATTTTATTAATTTATTTTCTATAAAGATAGCACCTATCCATAGAGGATTCTAGACTGCTCTTCTTTAACACAAAGAAATACTCTGTACCTTGCAGAAGAACGAACGGCTTCAAAATCAAAAAAAACGAGAAGCACCATTTTCATCCCTTCGTCAGGAAATTGCTAGGCAGCAAAGCCAGAGAAACAGAGGAAATAAAAGAATGATATGATCGAAGAAGAGAATGCAGAAAATTAGATAGCCATAACCTTCCCATTTACCAGGCCCAGTAAATTAGAATAAAAAGACTGAAAAAAGGGGAGAAATCAGCTCATCTGATGGCAGAATGGAAGCAGAAGGCATTCAAATGGCCTTCATTTCTCCTCCTCTTCCTTTCATGCAGCCTGCTGGCTTCTGCTCAAGCAAAGAGGGCATTTCCATTTCAGTTGGCAAATCATAATGCAAGCAGTGCATTCAAGGAACACAAGCAACTCTCCCCAGTAGCTTTGGGTTCTCTCTTTGAACCTGGGGACTCCACCACTCGAGTCTGGCCGGACATGGAGTTTGGGTGGAGAGTGGTGCTCGGGTCAATAATTGGTTTTCTCGGCGCCGCCCTCGGCAGCATCGGTGGCGTTGGTGGAGGAGGAATCTTCGTTCCGATGCTTACTCTAATCATCGGCTTTGATCCAAAGACTTCGACAGCGATCTCTAAGTGCATGATCATGGGAGCAGCTGGATCAACAGTGTACTACAATCTGAGGCTGAGGCATCCCATGATGGATTTGCCAATCATTGATTATGATCTTGCTTTGCTGCTTCAGCCCATGCTCATGCTTGGGATCAGCATTGGAGTTGCCTTCAATGTCATGTTCCCTGATTGGATGGTGACTGTGCTCCTCATTATTCTATTCTTAGGTACTTCCACAAAAGCACTGTTTAAAGGCATAGAAACATGGAAGAAAGAATCACTAATGAAAAAGGAAGCATCAAAAATGTTGGCCTCATCATCAAACTTGGATGGTTCAGAACAGGAATACAAGCCAATCCCGGGAGGTCCGACTGCCAGCATGCAGCTTAAATCTTCCATGGATGATGAGGTGCCGATAAAAGACAACATTTTATGGAAGGAGCTCATGGTGCTTCTGTTTGTGTGGGTGGCAATCCTTGGTGTCCAGATTATTAAGACTTATGCCACAACTTGTTCTGTCGAATACTGGATTCTGAATGCTTTGCAGCTGCCTATAGCTCTGTCAGTTACAATATACGAAGCTGCAAGTCTTATAAAAGGGACCAGAAAAATTGCCTCAAGAGGAAAGCAAAATATATGTTGGAAAGGGCTTCAGCTCTTCCTTTACTGCTGCTTTGGGGTTTTGGCAGGGATAGTTGGAGGTTTGCTTGGCCTTGGAGGAGGGTTCATCTTGGGACCTTTGTTCCTTGAAATGGGAGTCCCCCCACAGGTTGCAAGTGCAACATCAACCTTTGCAATGACATTCTCATCTTCCATGTCTGTCATTCAATACTACCTTCTCAATCGTTTTCCCGTTCCATACGCTTCTTATTTTGTGTTTCTTGCCACCGTTGCGGCTTTCACTGGTCAACACATTGTGAGGAAACTCATCGTATTACTTGGTCGGGCATCTCTGATCATTTTCATTCTAGCACTAACCATCTTTGTTAGTGCAATAAGTTTAGGTGGAGTTGGTATAGCAAACATGGTTGAGAAACTGGATAGAAAAGAGCATATGGGATTTGAGAACCTCTGCTACAGAACTTAAATGACAAGTTTAGAGACAACAAAGAGCTTCAACCAGAAGCCTCCTAATGAGGGCTAGTCATAATCGAAAAGACTTCCAGTTCACAACATTAGTATTAGCTAGTTTTCTTCTGTTTATCAACCTAGGTAATCGTCAGCTTATAAAATTCCTTTGTTGCTTAGTTGTCAGATATCTATTGTGCTCACTTGTTGTAGAAATGAATACCTTATAGTTTGGAACAAATTCTATGATAAAAAGATTACATTGTGTAAATCTATGAATATTTAGAAGAAATTTCAAATGTAT

Network for GWHGAAEX016957

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01925.18	TauE	31	194	2.70E-10
PF01925.18	TauE	260	444	6.20E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.620
SRP064423	SRR2545915	Juvenile tuber	14.170
SRP108465	SRR5643513	five period of Gastrodia elata	3.390
	SRR5643514	five period of Gastrodia elata	8.810
	SRR5643515	five period of Gastrodia elata	5.560
	SRR5643524	five period of Gastrodia elata	12.810
	SRR5643525	five period of Gastrodia elata	0.510
	SRR5643528	five period of Gastrodia elata	0.950
	SRR5643658	five period of Gastrodia elata	0.520
	SRR5643659	five period of Gastrodia elata	0.400
	SRR5643660	five period of Gastrodia elata	0.340
	SRR5643661	five period of Gastrodia elata	0.210
	SRR5643662	five period of Gastrodia elata	0.300
	SRR5643663	five period of Gastrodia elata	0.690
	SRR5643664	five period of Gastrodia elata	0.470
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.050
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.540
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.740
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.140
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.130
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.550
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.720
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.800
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.310
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.070
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.530
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.530
SRP279888	Gastro	Gastrodia elata tuber	0.73
	Juven	Juvenile tuber	1.57
	Mother_Gastro	Mother tuber of Gastrodia elata	0.76
	Mother_Juven	Mother tuber of Juvenile	1.32