Gene detail

Detail information of GWHGAAEX016959/evm.TU.scaffold_79.212

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|209966850\|ref\|YP_002299765.1\|	9.00E-164	phosphoribosylamine--glycine ligase [Rhodospirillum centenum SW]
KOG	KOG0237	0	Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS)
nr	gi\|115487740\|ref\|NP_001066357.1\|	0	Os12g0197100 [Oryza sativa Japonica Group]
Swissprot	tr\|P52420\|PUR2_ARATH	0	Phosphoribosylamine--glycine ligase, chloroplastic (Precursor)
trEMBL	tr\|I1R4U1\|I1R4U1_ORYGL	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:ORGLA12G0054700.1}
TAIR	AT1G09830	0	Glycinamide ribonucleotide (GAR) synthetase

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000082	4108849	4121650	-

Transcript Sequence
>GWHTAAEX016959 TTTGCGACGACTCACGCAAGGTCGCGACGACTCCCTCTCGCCTCTCGCGCAAGCAGCAGCCGATCAGGTGCCATTGCTTTAGCTATACATAGCTGCTATGTACTGCACTTCTGCTTATCTAGGGAACTGCTTAAAATTGCCTGGCTGTAGAAGAATAACTTTCAAGAACTATATCAGAACTGGCTACAGAGTTTCATCCAATTTTCACAACCCTCTTTGGTCTTTCAGCATTGATGCAGTGGGCCACCTCTCTGGTTTCAATTTTATTTTACAGAGTTCAAAGAATTCGAATGCTGGTTCTGTTCAGAATGCTTTCTCAGACAATGGTAATAGCGAGGCTTGTGAAGAAAGAGTTGTGGCACTAGTTATTGGTGGAGGTGGAAGGGAACATGCACTTTGCTATTCTTTGCAACGTTCTCCCTCATGTGCTCGAGTCTTTTGCGCTCCTGGAAATGCCGGAATTGCTTATTCTGAGGATGCAACTTGCATACCAGACTTGAATATTTCTGACAGTGCAGCTGTTATTTCTTTCTGTCGATTGTGGGGTGTAGGATTGGTGGTAATTGGCCCTGAAGGACCACTGGTTACTGGCCTTGCTAATGATCTTGCTAAGATTGGGATTCCCACGTTTGGGCCATCATCAGAAGCTGCAGTGTTGGAAGGTTCTAAGGATTTCATGAAAAAACTGTGTGATAAGTATGGCATTCCTACCGCAAAGCATCGAACTTTTATTGATTCATCTGAAGCAAAACAATATATTAAAGAACAAGGAGCTCCTATTGTAATTAAGGCAGATGGATTGGCTGCTGGGAAGGGAGTTATTGTTGCCATGACTCTGGAGGAGGCATTTGAAGCTGTGGACTCGATGCTGGTGAAAGACATTTTTGGCTCTGCTGGTTCACGAGTCATAATTGAAGAATATCTAGATGGCGAAGAAGCTTCATTCTTTGCTATAGTTGATGGAGAAAATGCTCTTCCTCTTGAGTCAGCTCAGGATCATAAAAGAGTTGGTGATGGCGATACTGGTCCAAATACTGGTGGCATGGGTGCTTATTCTCCTGCTCCTGTTTTGACAAAAGAGCTGCAATCTTTGATCATGGAGTCCATTATTTCTCCTACGGTGAAGGGTATGGCTGCTGAAGGCCGTAAATTTGTTGGCGTGCTTTATGCTGGTCTTATGATAGAGAAGAAATCGGGGCTGCCTAAACTAATTGAATATAATGTGCGATTTGGAGATCCAGAATGTCAGGTTCTGATGATGAGGCTAGAGTCGGATTTAGCGCAGCTTTTGCTTGCTGCTTGCAGAGGGGAGCTGCTGAGCAATAACGCCTTTTCAGTGGAGTGGTCGCCGGAAGCAGCAATGGTGGTTGTGATGGCAAGCGAAGGGTATCCGGCGGCGCACAAGAAGGGAACGGTCATACGAAATCTCGAAGGAGCAGAGCGCATTTCTCCCTCTGTCAAGGTATTCCACTCTGGAACGGCTCTCGGCTTGGAAGGCGATATTGTCGCCATCGGTGGCCGTGTGCTCGGCGTCGCGGCGAAGGGGAAGGATATTGAGGAAGCGAGGAAATGGGCTTATGAGGCGGCGGAGGCTATCGATTGGCCGCAGGGATTCTTCAGGAGGGATATTGGCTGGAGGGCACTCTGCCCCCAACGTCTGGTAGAAAAGCAGGCTTGAAAATTTGGTAGCCATTTTACTTGAGAGATTAATAGTGGGGTTGTGCTTCATAGTGGGATAGGTCTCCTCTTTAGTTATTAAAGTATGACAATAAGTTATGCAGGTAGAGTACTAATATTATGAAATTGGCTTAGAATCATCAGGTCCTAGAGAAGTATTAGTATTAATACTTTTCAAACTCAAATTTCATTAATAGTAAAATGTTTAATCTTATCAACAACCGTACTAGCTTGAAAACATTGCCAATCCCTTGAAAGTGATTTGCTACGCGTTAAATATTGTCAAACTGAGCTACAAAATCGTCCAAGAATAATAAAATTATTGCCATTTCGATTGTTGAGTTGATTGTGAAGAAATCAAACTCATCCTATCTAAGAATAACAATGTTTTGCTTCTTTGTTGCAACCGCTCTAGGCTTAGTATTAAAATCAAATAAGTTGAATGGAAATAGAGATAATGGTACCACCATTCAGATTCCTAGCAAACCCATCTTGTAAGGCTCCTGGTTGTGAGGCCTGTCGTCATGATTTTTTTCACCAAAACATCTATGAGAATTTATAATTAGTTTATTGACTGTGGA

Network for GWHGAAEX016959

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02844.14	GARS_N	89	188	4.00E-27
PF01071.18	GARS_A	189	383	2.10E-82
PF02843.15	GARS_C	421	514	8.90E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01945	purD	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of antibiotics	map01130
		Purine metabolism	map00230

Gene Ontology

GO term	Ontology	Name
GO:0009113	Biological Process	purine nucleobase biosynthetic process
GO:0004637	Molecular Function	phosphoribosylamine-glycine ligase activity
GO:0005524	Molecular Function	ATP binding
GO:0046872	Molecular Function	metal ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	48.430
SRP064423	SRR2545915	Juvenile tuber	35.740
SRP108465	SRR5643513	five period of Gastrodia elata	48.500
	SRR5643514	five period of Gastrodia elata	44.740
	SRR5643515	five period of Gastrodia elata	42.660
	SRR5643524	five period of Gastrodia elata	44.800
	SRR5643525	five period of Gastrodia elata	67.470
	SRR5643528	five period of Gastrodia elata	55.350
	SRR5643658	five period of Gastrodia elata	60.870
	SRR5643659	five period of Gastrodia elata	53.900
	SRR5643660	five period of Gastrodia elata	73.910
	SRR5643661	five period of Gastrodia elata	56.300
	SRR5643662	five period of Gastrodia elata	71.400
	SRR5643663	five period of Gastrodia elata	74.610
	SRR5643664	five period of Gastrodia elata	81.040
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	63.960
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	34.470
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	50.690
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	70.440
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	63.070
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	62.280
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	61.750
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	56.320
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	55.560
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	52.490
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	46.730
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	46.730
SRP279888	Gastro	Gastrodia elata tuber	91.56
	Juven	Juvenile tuber	75.15
	Mother_Gastro	Mother tuber of Gastrodia elata	78.03
	Mother_Juven	Mother tuber of Juvenile	72.01