Gene detail

Detail information of GWHGAAEX016967/evm.TU.scaffold_79.219

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1267	Mitochondrial transcription termination factor, mTERF
nr	gi\|743856987\|ref\|XP_010942004.1\|	PREDICTED: uncharacterized protein LOC105060100 [Elaeis guineensis]
trEMBL	tr\|M0SRB7\|M0SRB7_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P23060_001}
TAIR	AT2G21710	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000082	4257799	4283144	-

Transcript Sequence
>GWHTAAEX016967 TCATGGCGTTCTCCGTTCAAACACCAACAATACACCCTCTTTTTCTTCAGCAAAGTTCCACCTCTGTTCATCTTCATCCCCCCCGCCTCCTCGTCCTCCCTCCCCTCCAATCATCAACATTGCCATCGCCCTCTTCTTCACAACCACAGGAATCCTCATCTTCCCGGCAGAAGACTGCTCTTTCCACTACCCTTCTTAGCCTCCACGGTCACCAGGAAGAGAAACCTGTTCCATCCCTCCATGGCAAAGAAGACGGCGATTCTCTCTCCACAACGAGAACGCCTTGGTTTCCTGATTCCATCGGTTCCTCTAAGGAAGATGCTATCGTTGATAAACAGGCATTTAAGCAAGCTCTTGTGATTAGGCGAAGGGTTGTGGTCGAGGTTTTAAAGGCGGAGCTGAATGCCGGGAGGCTCAGAAAAACTTACTCGGCTAAAGTAGTTTTGTGCTTGCCAAATTTTATCGATCAGGTTGTAATCGAGGCGGCTAAGATGAAAGTGGTGCCTGAGCACTCTCACCTTTCCTTCAATGCTCGAGCAAAGATCTATATACAGAGATCTGGCGTGGTCAAACTCGTGAAGTGGTTAAAGCACAATTCCTTGAGCTATCCTCGGATTGGTAAGTTGATATGCTTGTGTTCCAGTGATCTCCAGCGGGTGAGGAAACTAGCTGAGTGGTTGAAGGCCATGCATGTGGATGAGAATTTTCTTGGTCATGTGCTTGTGAAAGCATGTTCGATTTTGGAGCTCAACTTGGAAGTGCTGGATGAAATTGTTGATTATCTTACGAAAAACGGGGTGAAGAAAGAATGTTTTGGTTTTGTTGTGATCAGATGTCCACAAGTGCTAAGTCTTAGCATGGCTGAAATGCAATCTCGTGTAAAGTTTTATATGCACATTGGCATGGATCAGAAGGACTTTGGTACAATGGTCTCTGAGTATCCTAAGGCGCTTGGGTTCTTCAGCATGGAAGAGATGAATAGTAAGGTCAAATATATCAAGGAGTTTGGCTTGAATGATGAAGAAGTGGGGTGTTTGTTATCTCGCAAACCGCAACTCATGGGTTGTGGTATTGAAAAACGGTTGAAACCCTTGGTGAAATACTTGTATTACCTTGGTGTAAGCCGTGATGGTATGAAAAGAATTCTTATGGCAAACCCAACAATCTTTTGTTGTGATTTGGAGAAAAATATTGCTCCAAAGGTGCGCTTTTTACAGGATATAGGTGTTCGACAAGAAGATCTTGGCAGTATTATATCAAGTTTCCCGTCATTGTTAACCTACAGCCTCTACAAAAAAATTCGACCAGTGGTCATTTTCTTGTTGAAAAAAGCTGGGGTAACCCAAGGAAATATTGCCAAGGTGATTTCCTCTGATCCAGAGCTCATCGGCTCCAGCATCACAAACAAGCTGGATGCCAACGTCAAGTACTTCCTGTCATTGGGATTTCATCTGGACACAATTGGAGAGATGATAGCAAACTTTCCAATGCTTCTCAGATATAATTTACATATCCTGCGCCCTAAATACCAGTATCTGCGGAGAATTATGGTCCGCCCATTACAGGATCTCATTGAGTTTCCCAGGTTCTTCAGCTATTCATTGGATGGAAGAATTAAACCGAGGCACGAGATTCTCATTAAGAATCACATCAATTTCAATTTGCGCTACATGTTGGCTTGTTCCGACCAGGAATTCAACCGGAGGGCCGAGTCCGCCCTCGAAACCCGCAAAAAATTCGAGTCCTGTGAGATCCATTTCGACTTTCTTGGTTCCGATTAAAATCTGGAAGAATTAAACTGAGGCACGAGATTCTCATTAAGAATCACATCAATTTCAATTTGCGTTACATGTTGGCTTGTTCCGACCAGGAATTCAACCGGAGGGCCGAGTCCGCCCTCGAAACCCGCAAAAAATTCGAGTCCTGTGAGATCCATTTCGACTTTCTTGGTTCCGATTAAAATCTCTCTGCTTCATCTCTCGAGGTATATGTGCATAATATATATTTTATCTTAAAGAAGAGTAATAAAATCCATATAATGCTAACTTCGCAGCTTTCATGCTAATGGCTTTACAAAATCAGATACATGAAAAAACATGTTTCAGCAATGCGAGAGTTTAATATGTAAAAGATATTTATTATGTGTTATGTACTTAGATTTCATGAATTTTATTGTAGAATTTCAAAGCCAAGAAAAAT

Network for GWHGAAEX016967

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.13	mTERF	187	297	9.00E-11
PF02536.13	mTERF	288	565	1.60E-65

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003690	Molecular Function	double-stranded DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.040
SRP064423	SRR2545915	Juvenile tuber	2.180
SRP108465	SRR5643513	five period of Gastrodia elata	1.060
	SRR5643514	five period of Gastrodia elata	1.640
	SRR5643515	five period of Gastrodia elata	1.620
	SRR5643524	five period of Gastrodia elata	1.300
	SRR5643525	five period of Gastrodia elata	1.900
	SRR5643528	five period of Gastrodia elata	2.640
	SRR5643658	five period of Gastrodia elata	1.260
	SRR5643659	five period of Gastrodia elata	1.770
	SRR5643660	five period of Gastrodia elata	1.830
	SRR5643661	five period of Gastrodia elata	2.320
	SRR5643662	five period of Gastrodia elata	2.230
	SRR5643663	five period of Gastrodia elata	2.340
	SRR5643664	five period of Gastrodia elata	2.520
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.020
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.480
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.110
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.950
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.530
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.380
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.020
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.530
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.360
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.860
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.730
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.730
SRP279888	Gastro	Gastrodia elata tuber	1.82
	Juven	Juvenile tuber	1.99
	Mother_Gastro	Mother tuber of Gastrodia elata	3.89
	Mother_Juven	Mother tuber of Juvenile	3.23