Detail information of GWHGAAEX016968/evm.TU.scaffold_79.220
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|283777884|ref|YP_003368639.1| | 7.00E-107 | amine oxidase [Pirellula staleyi DSM 6068] |
| KOG | KOG4254 | 0 | Phytoene desaturase |
| nr | gi|672127561|ref|XP_008787248.1| | 0 | PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 [Phoenix dactylifera] |
| Swissprot | tr|Q8S4R4|CRTSO_SOLLC | 5.00E-14 | Prolycopene isomerase, chloroplastic (Precursor) |
| trEMBL | tr|M0T4G7|M0T4G7_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P05690_001} |
| TAIR | AT5G49550 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000082 | 4296607 | 4336213 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016968
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01593.23 | Amino_oxidase | 23 | 144 | 0.00015 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.890 |
| SRR2545915 | Juvenile tuber | 5.780 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.060 |
| SRR5643514 | five period of Gastrodia elata | 4.750 | |
| SRR5643515 | five period of Gastrodia elata | 5.280 | |
| SRR5643524 | five period of Gastrodia elata | 5.100 | |
| SRR5643525 | five period of Gastrodia elata | 1.840 | |
| SRR5643528 | five period of Gastrodia elata | 1.710 | |
| SRR5643658 | five period of Gastrodia elata | 1.220 | |
| SRR5643659 | five period of Gastrodia elata | 9.520 | |
| SRR5643660 | five period of Gastrodia elata | 9.940 | |
| SRR5643661 | five period of Gastrodia elata | 7.350 | |
| SRR5643662 | five period of Gastrodia elata | 13.370 | |
| SRR5643663 | five period of Gastrodia elata | 14.060 | |
| SRR5643664 | five period of Gastrodia elata | 15.670 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.020 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.290 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.490 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.080 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.160 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.280 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.520 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.570 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.090 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.650 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.640 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.640 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.31 |
| Juven | Juvenile tuber | 4.47 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.08 | |
| Mother_Juven | Mother tuber of Juvenile | 4.24 |