Detail information of GWHGAAEX016969/evm.TU.scaffold_79.221
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|269836508|ref|YP_003318736.1| | 1.00E-84 | histidyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745] |
| KOG | KOG1936 | 0 | Histidyl-tRNA synthetase |
| nr | gi|695026890|ref|XP_009400761.1| | 0 | PREDICTED: histidine--tRNA ligase [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|P93422|SYH_ORYSJ | 0 | Histidine--tRNA ligase |
| trEMBL | tr|M0SYD7|M0SYD7_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P14080_001} |
| TAIR | AT3G02760 | 0 | Class II aaRS and biotin synthetases superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000082 | 4375699 | 4424582 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016969
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13393.5 | tRNA-synt_His | 480 | 798 | 3.70E-45 |
| PF03129.19 | HGTP_anticodon | 819 | 906 | 5.20E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01892 | HARS, hisS | Aminoacyl-tRNA biosynthesis | map00970 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006427 | Biological Process | histidyl-tRNA aminoacylation |
| GO:0004821 | Molecular Function | histidine-tRNA ligase activity |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 31.950 |
| SRR2545915 | Juvenile tuber | 28.030 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 34.990 |
| SRR5643514 | five period of Gastrodia elata | 31.970 | |
| SRR5643515 | five period of Gastrodia elata | 29.350 | |
| SRR5643524 | five period of Gastrodia elata | 33.590 | |
| SRR5643525 | five period of Gastrodia elata | 26.910 | |
| SRR5643528 | five period of Gastrodia elata | 32.230 | |
| SRR5643658 | five period of Gastrodia elata | 28.430 | |
| SRR5643659 | five period of Gastrodia elata | 37.730 | |
| SRR5643660 | five period of Gastrodia elata | 35.850 | |
| SRR5643661 | five period of Gastrodia elata | 40.190 | |
| SRR5643662 | five period of Gastrodia elata | 37.730 | |
| SRR5643663 | five period of Gastrodia elata | 37.260 | |
| SRR5643664 | five period of Gastrodia elata | 37.940 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 30.560 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 35.530 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 28.980 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 31.780 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 26.980 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 27.540 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 29.170 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 28.830 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 27.070 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 25.090 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 30.710 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 30.710 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 37.07 |
| Juven | Juvenile tuber | 57.54 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 34.33 | |
| Mother_Juven | Mother tuber of Juvenile | 50.91 |