Detail information of GWHGAAEX016970/evm.TU.scaffold_79.222
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 1.00E-47 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|743761633|ref|XP_010943231.1| | 0 | PREDICTED: receptor-like protein kinase HAIKU2 [Elaeis guineensis] |
| Swissprot | tr|Q9LJM4|IKU2_ARATH | 0 | Receptor-like protein kinase HAIKU2 (Precursor) |
| trEMBL | tr|V4T676|V4T676_9ROSI | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESR46950.1} |
| TAIR | AT3G19700 | 0 | Leucine-rich repeat protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000082 | 4432020 | 4436518 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016970
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 22 | 64 | 1.00E-07 |
| PF00069.24 | Pkinase | 664 | 930 | 1.80E-43 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-XI-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 16.220 |
| SRR2545915 | Juvenile tuber | 24.300 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.820 |
| SRR5643514 | five period of Gastrodia elata | 4.830 | |
| SRR5643515 | five period of Gastrodia elata | 26.580 | |
| SRR5643524 | five period of Gastrodia elata | 8.580 | |
| SRR5643525 | five period of Gastrodia elata | 19.990 | |
| SRR5643528 | five period of Gastrodia elata | 79.310 | |
| SRR5643658 | five period of Gastrodia elata | 19.350 | |
| SRR5643659 | five period of Gastrodia elata | 35.450 | |
| SRR5643660 | five period of Gastrodia elata | 18.360 | |
| SRR5643661 | five period of Gastrodia elata | 30.080 | |
| SRR5643662 | five period of Gastrodia elata | 34.330 | |
| SRR5643663 | five period of Gastrodia elata | 18.390 | |
| SRR5643664 | five period of Gastrodia elata | 51.470 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.560 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.900 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.660 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.900 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 13.230 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 19.030 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 33.640 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 17.270 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 17.840 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 47.900 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.460 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.460 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.28 |
| Juven | Juvenile tuber | 3.43 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 176.02 | |
| Mother_Juven | Mother tuber of Juvenile | 89.38 |