Gene detail

Detail information of GWHGAAEX016972/evm.TU.scaffold_79.224

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|343085920\|ref\|YP_004775215.1\|	2.00E-52	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
nr	gi\|695039159\|ref\|XP_009407104.1\|	0	PREDICTED: uncharacterized protein LOC103989885 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9SGP2\|HSL1_ARATH	0	Receptor-like protein kinase HSL1 (Precursor)
trEMBL	tr\|A0A0A0LHS0\|A0A0A0LHS0_CUCSA	0	Uncharacterized protein {ECO:0000313\|EMBL:KGN60297.1}
TAIR	AT5G49660	0	Leucine-rich repeat transmembrane protein kinase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000082	4441712	4445357	+

Transcript Sequence
>GWHTAAEX016972 AAAAAAAAAGATTTCTTAGATTATGTAGCGATGTCTTTTTATTCATACTAATGACTCCAACCGACAAATGCAGTGAACACTCTGAAGGACTGATACAAAAATGAGTTTTTTGGATATCATTACTAATATTAATACTCAGAGCAAGGAAATGATTAAACATTTTAAAAAATTGAAAAGATATTTATGAGTTCATAGCTTCCTCTCCACATGTGTGCCTCCTAAGCTCCCACTATGCTCAAATGATTCTCCAAACATTTTCCTCTGCATATATAAACTCATAACCTTTCAATCAATATAGCAATAACTGTCGTTAAATCCTTGAAAAAGAAATGTCATTCGTTTCCATCTTCTTCTTACATCTCTCTCTCTTCTTCCCTCATCTCCCTTATTCACTCCAATCCCTTCAACCACAATCAAACTTCCTCTTCCTGATGCAGCAATCCCTTGCCGGTATCACCAGCAACTGGAACTTTACCAACAGAAACCCTTGCAGCTTCTCTGGCATCTCCTGTGATGATGATGAGCAACAAAACATCATCCAAATTGACCTCTCATCATCCTCTTTAACCGGAAACTTCCCTCCCGGCATCTGCACATCCATTCCTCATCTCAACACACTCCGCCTTGGTTTCAACAACATCCTCAGTGGCTTCCCCATTGACCTTTTCAACTGTTCTCGCTTAGAAGAGCTCAACCTCACCAACTCCGGCATAACAGGAACCATCCCTGATTTGTCCAGCCTCAGTTCTCTCCGCACACTTGACCTCTCCAATAACATCTTCTCTGGCGACTTTCCACTCCACATTGCAAATCTAACGAATATTGAAGTCATAAACTTCAATCAAAATCCCAACTTTAATGTTTGGAAGCTGCCAGAAACCATCACCGGATTAAAGAAGCTCAGGGTGTTGATTCTTTCAACAACTTCCATGCGAGGAGAGATACCTCCATGGATTGCTAATATGACTTGGCTCACTGATCTTGAGCTGAGTGGGAATATGCTCTCCGGAAGGATTCCAGCAAGTATTGGAAGGATGCAAAACATCCAGCTTCTCGAGCTGTATTATAATCAGCTCGAAGGGGAAATACCAGCCGAACTTGGCAATTTAACTCAGCTTATCGACATTGACTTATCGGTGAATCAGCTCACAGGAAGAATACCAGAAAGTCTCTGCAGGCTGACAGAACTCAGAGTTCTGCAGCTTTACAGCAACAGCCTCATCGGGGCAATACCACAAGCGCTTGGGAACTCAACATCGCTTACAATTCTATCAGTTTACCAGAATTCACTGTCCGGGGAGCTCCCGCAGACATTAGGCAAGTTCTCCAAGCTGCTTGTGCTTGAGCTCTCAGAGAATCGGTTTTCAGGAAAATTACCAAGAGATGCATGCGCAGCAGGCAAGTTACTTTATTTCTTATTACTTGGCAATCAGTTCTCTGGCGAGCTACCGGAGAATTACGTGAGATGCAAGTCTTTGTTGCGTTTTCGTGTGAATAACAATGAATTGACCGGTGAAGTACCTAACATGATATTCGGCCTCCCTCGTGCTTCCATTATTGACCTTAGCTTCAACAGATTTCAAGGACGCTTCACAAAATCTATAGGAAATGCAAAGAACTTGTCAGCTTTGTTCTTGCAAAATAATCAGTTTTCAGGAAGGTTACCTCCGGAGCTCTCAAAGGCTGCCAGTTTGGTGAAGATGGATCTCAGTAACAACTTCTTTTCAGGTTCAATTCCAGCTGAAATGGGAAACTTGAGCAAGCTAAATCAGCTTTCATTGCAGAGGAACAGACTTGACTTTGCAATTCCTGAATCACTTTCTAAACTTAAATCCCTCAATGTGCTGAACCTTTCCAATAATCTCCTCACAGGCGAAATACCCAACAGCCTTTGTGATCTCCTTCCAAATTCACTGGATTTTTCCAACAATAAACTATCCGGTCCAATTCCCCTCCCGCTTATCAAAGATGGACTTATTGAAAGGGTTTCAGGCAATCCTGGCCTGTGTGTTCCCATTCATTATAATCTCACTGAACCAATTCTTCCAATCTGTCCACAACCCAGCTATATAAGGAGACTGCATACCATTTGTGCTATTGCAGTTTCTGTAACCCTGTCCATGCTCGGAATCCTCTTTCTTACTAAGCATTTGTTGGGCATGAAGAACAAGTTCAACAAGCATGATCAACTCTCGCCCTCCCCATCTTTCTCCTTTGAGATGACAAGCTTCCACAAGGTAAGCTTTGATCGGCACGAGATAACAGAAGCACTGATTGACAAGAACATTGTTGGCCACGGAGGATCCGGAACAGTATACAAGATAGAGCTAAGCAACGGAGAGTGGATTGCAGTGAAGAAGATGTGGAAGAAAAAGACAAAGGATATTTCAACATACCCAGAAAAGATGTATATTGATAAGGAGCTGAGGGCAGAGGTGGAGATACTGGGAAGCATAAGGCACAAGAACATAATAAAGCTATACTGCTACTTCTCAAGCTTAGATAGCAATCTTCTCATATATGAGTACATGCCTAATGGAAATCTTTGGGATGCTCTTCACAATTCCTGGAGTTTCCTGAATTGGCCTACTAGGCATCGGATTGCCCTCAGGATAGCGGAGGGACTGGCTTATATACACCATGATCTCTTGTGCCCAATCATTCATCGAGACATCAAGAGCTCAAACATACTTCTTGATACCGATTTTGAACCAAAAATTGCTGATTTTGGAATTGCTAAGGCCTTGAATGCAGATGTAAATAACACAGCATCCACCCCTGTGATTGCTGGAACCTATGGATACTTAGCCCCAGAATATGCCTACTCCTCCAAAGCAACTACAAAGTGCGACGTCTATAGCTTTGGCGTGGTGCTTATGGAGCTGATAACAGGGAAGAAACCGGTTGATGCTGAACTCAGCGAGAACAAGGGCATCGTTTACTGGGTCTCAAGCAAAATAGCAACCCGAGAAGAGGCGCTTGAGGTATTGGATGAAAAACTCTCAGGAAGCCCATTCAAGGAAGAGATGATCAAGATGCTGCAAATTGAACTGCGGTGCACCTTCAGCTTGCCTGCACTTCGGCCATCCATGAATGAAGTTGTCCAGCTCCTGATTGAGCTAGAGGCATGCAAGAATGATGTGGCTGGTGGATCTTCCTTTTAAGTTAAAGGCCTAAGTTCCATCCGCAAAAAGTACAACTAGATTTAGAATTGAGAATCAAAATATAGTAACTGGTTAAATAGACTAGACTGGTTTTCGTAATATACACGTTTGGAGAACCTTTGGCTCCTCAAATGTTATACATTTCTGTTCAAATGAATAAAGCCATACTCCCAAACTTATATATAAACAATCATTTTTAATAATTCCTGCGGACCGCATCAGCATGAATGAAAAGCATATCTCATTTAAGCATTCACTCAAAGAATTGTAAAACTTAGAAATTTTACTTGATTGAGCAGCGTCAATCATAAAAAATAAAGCCATAAGAATTTTGAAGGATCTACAAGGCTACTACTACGCACACACAGCTTTGTAATTACGCAGCATCCGATTCTTTAAATG

Network for GWHGAAEX016972

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.11	LRRNT_2	30	62	0.00028
PF00560.32	LRR_1	140	162	0.8
PF00560.32	LRR_1	503	523	1.7
PF00069.24	Pkinase	651	925	6.10E-49

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.700
SRP064423	SRR2545915	Juvenile tuber	2.430
SRP108465	SRR5643513	five period of Gastrodia elata	0.940
	SRR5643514	five period of Gastrodia elata	1.280
	SRR5643515	five period of Gastrodia elata	1.230
	SRR5643524	five period of Gastrodia elata	0.840
	SRR5643525	five period of Gastrodia elata	10.680
	SRR5643528	five period of Gastrodia elata	14.470
	SRR5643658	five period of Gastrodia elata	13.370
	SRR5643659	five period of Gastrodia elata	0.700
	SRR5643660	five period of Gastrodia elata	0.240
	SRR5643661	five period of Gastrodia elata	0.650
	SRR5643662	five period of Gastrodia elata	0.740
	SRR5643663	five period of Gastrodia elata	0.930
	SRR5643664	five period of Gastrodia elata	1.070
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.540
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.600
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.540
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.980
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.300
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.840
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.670
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.180
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.010
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.940
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.320
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.320
SRP279888	Gastro	Gastrodia elata tuber	0.98
	Juven	Juvenile tuber	0.13
	Mother_Gastro	Mother tuber of Gastrodia elata	14.69
	Mother_Juven	Mother tuber of Juvenile	4.55