Detail information of GWHGAAEX016973/evm.TU.scaffold_79.226
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1376 | 0 | Alpha tubulin |
| nr | gi|590706185|ref|XP_007047652.1| | 0 | Tubulin alpha-2 chain [Theobroma cacao] |
| Swissprot | tr|Q6VAG0|TBA2_GOSHI | 0 | Tubulin alpha-2 chain |
| trEMBL | tr|A0A061DH83|A0A061DH83_THECC | 0 | Tubulin alpha-2 chain {ECO:0000313|EMBL:EOX91809.1} |
| TAIR | AT1G50010 | 0 | tubulin alpha-2 chain |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000082 | 4463486 | 4465863 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016973
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00091.24 | Tubulin | 3 | 213 | 1.20E-67 |
| PF03953.16 | Tubulin_C | 263 | 391 | 6.90E-50 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K07374 | TUBA | Phagosome | map04145 |
| Apoptosis | map04210 | ||
| Tight junction | map04530 | ||
| Gap junction | map04540 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0007017 | Biological Process | microtubule-based process |
| GO:0003924 | Molecular Function | GTPase activity |
| GO:0005525 | Molecular Function | GTP binding |
| GO:0005200 | Molecular Function | structural constituent of cytoskeleton |
| GO:0005874 | Cellular Component | microtubule |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.630 |
| SRR2545915 | Juvenile tuber | 11.870 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 135.170 |
| SRR5643514 | five period of Gastrodia elata | 127.760 | |
| SRR5643515 | five period of Gastrodia elata | 110.890 | |
| SRR5643524 | five period of Gastrodia elata | 108.190 | |
| SRR5643525 | five period of Gastrodia elata | 155.270 | |
| SRR5643528 | five period of Gastrodia elata | 171.660 | |
| SRR5643658 | five period of Gastrodia elata | 619.160 | |
| SRR5643659 | five period of Gastrodia elata | 87.690 | |
| SRR5643660 | five period of Gastrodia elata | 32.790 | |
| SRR5643661 | five period of Gastrodia elata | 77.740 | |
| SRR5643662 | five period of Gastrodia elata | 28.040 | |
| SRR5643663 | five period of Gastrodia elata | 27.650 | |
| SRR5643664 | five period of Gastrodia elata | 12.360 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 232.090 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 241.150 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 270.060 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 200.630 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 150.030 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 80.630 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 204.480 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 247.600 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 422.160 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 281.450 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 285.440 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 285.440 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 19.78 |
| Juven | Juvenile tuber | 52.96 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 29.20 | |
| Mother_Juven | Mother tuber of Juvenile | 36.99 |