Gene detail

Detail information of GWHGAAEX016975/evm.TU.scaffold_79.228

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1303	Amino acid transporters
nr	gi\|218199044\|gb\|EEC81471.1\|	hypothetical protein OsI_24794 [Oryza sativa Indica Group]
Swissprot	tr\|P92934\|AAP6_ARATH	Amino acid permease 6
trEMBL	tr\|B8B726\|B8B726_ORYSI	Putative uncharacterized protein {ECO:0000313\|EMBL:EEC81471.1}
TAIR	AT5G49630	amino acid permease 6

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000082	4515070	4519818	+

Transcript Sequence
>GWHTAAEX016975 CTCAAATATAACCAAAGTTTGTAAAGCATAGGCTCAACGAAAACACATCGGTTTGACAAATTGAACAAAAGTGCAAGTACCACGTTCCGCTGTGCCTGTTCACATTCTTCTCTATAAAAACGGATCCCCATCTCTCATCCTTCCCACTTCCCTCTGCCACCCCTCTACCCAAAGCCCAAACCAGAGGGCAAAGCCACCATGGAAGAAGTGGGGCAGCAGGGAAAAACCTCCTCCTTCCCAGATGAATCAGGCGCCTTCGAGATCGCCCCCAGCCCTCGCAAAGCGATCGACGACGATGGAAGAGCCAGACGAACAGGGACATTGCTCACGGCCAGCGCCCACATAATTACGGCAGTGATTGGCTCCGGCGTTCTGTCCTTATCGTGGGCCAACGCGCAGCTTGGCTGGGTCGCAGGCCCCGCCGTCCTCACCGCCTTCTCCCTCATCACCTGGTTCTGCTCTTCCCTCCTCTCAGACTGCTACCGCTCCCCAGACCCTGTTCACGGCAGGAGAAACTACAGCTACATGGAAGCCGTCAAAGCCAATCTCGGCGGCATCAAATTCAAATTTTGCGGCTTGGCGCAGTATGTGAATCTCGTCGGCGTCACCATTGGCTACACGATTACCACAGCCATCAGCATGGGGGCAGTGAAGAGGTCGAATTGCTTCCACCGGCACGGCCACGATGCCGCTTGCAGAGTATCGAACAATGTGTATATGATAGCTTATGCGTGCATACAGATAGTGCTGTCTCAAATACCAAATTTTCATAAGCTTTCTTGGCTGTCCCTCGTCGCTGCCGTTATGTCTTTTGTCTATTCTACCATAGGGCTCGGCCTCGCCATAACCAAAATAGCAGATGGGACGAGGGGAAGGACCACCTTGACAGGAGTGACAATTGGTGTTGATGTATCCGCAAGTGAGAAGGTGTGGAGGACTTTTCAAGCTCTGGGAGATATAGCCTTTGCTTACTCTTTTTCTAATGTCTTGATCGAGATCCAGGACACATTGAAATCAACTCCTCCAGAAAACCAAGTCATGAGGAAAGCCACATTTGTTGGCGTCACAACCACAACCATCTTCTACATGCTGTGCGGCGTTTTGGGCTACGCGGCGTTCGGAAACAAAGCGCCCGGCAATTTCCTCACCGGCTTTGGCTTCTACGACCCATTCTGGCTCGTCGACATTGGCAACATCTGCATCGCCATCCATTTGATCGGCGCGTATCAGGTGTTCTGCCAGCCTATCTTTCAGTTTGTAGAGAATGTGAGCCGCAGCCGGTGGCCGGATAGCCATTTCGTGACGGGCGAGAGGATCATTAGGATTCCGGTGGTCGGAAAGTACCCCTTCAGCGCATTCCGTCTGGTTTGGAGAACGTCATATGTGGTTGTGACGGCGGTTGTAGCCATGATCTTCCCGTTCTTCAATGACTTTCTGGGATTGATCGGAGCGCTGGCCTTCTGGCCGCTGACGGTTTTCTTCCCTGTCGAGATGTACATAAAGCAGGCAAACGTGAAACCGTGGTCGAATACATGGGTGTGGCTTGAGATACTGAGCATGGTCTGCCTTTTGGTGTCTGTGGCTGCCGCCTGCGGGTCTGTGCAAGGGCTCGTCCACGCGCTCTCCGGTTACAAGCCCTTTAATAGCTCGTCGGATTGATTGCGGTTGCAATGATTGCTCTGTATACTATTTTGATTGCTTCTTCGTAATTATTTTCTTGGAAGAATTCGAGGGCTGGCGCCGCCCAGTCTCATTCCATGACATAATAATAGAGATAGTTACAGCAGTTCAGAGACCCTATTTAGGTTAACAAGTGTTGAATTAAATTTGCATATAAACTCAATTTTCATTGATTATATGTTTGCTTTTTGTTGAAGAGTTTCTTCTTCTTTCAAAAAAAGCAGCACAACAAGTTCACTGCAGTAACTTAAGATATGCAGAGATATCTCATTACAAAGGCTATTAGAATAATGGATATCATAAACGAAAAGATGAGCTAAATAATTAGTTTGCTAACAGGCATTAAACTTTCTAATATGCTTCACAAGGAGAGCAGATGAAAGAAAAATGTTTTTCCGCGATTTCAACAAACTCCATGAGAGCATTTAGAAGCTGGTCTCTAGCTGTTTGTAAGAATAGCATTCTTAATTTGTTAACAATATAATAATAATACAAGAATAGCATTTTTAATCATCC

Network for GWHGAAEX016975

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01490.17	Aa_trans	39	471	1.60E-116

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	12.380
SRP064423	SRR2545915	Juvenile tuber	7.350
SRP108465	SRR5643513	five period of Gastrodia elata	35.230
	SRR5643514	five period of Gastrodia elata	13.570
	SRR5643515	five period of Gastrodia elata	36.320
	SRR5643524	five period of Gastrodia elata	18.040
	SRR5643525	five period of Gastrodia elata	147.950
	SRR5643528	five period of Gastrodia elata	129.810
	SRR5643658	five period of Gastrodia elata	160.770
	SRR5643659	five period of Gastrodia elata	14.240
	SRR5643660	five period of Gastrodia elata	4.930
	SRR5643661	five period of Gastrodia elata	12.430
	SRR5643662	five period of Gastrodia elata	12.950
	SRR5643663	five period of Gastrodia elata	9.970
	SRR5643664	five period of Gastrodia elata	10.060
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	52.850
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	67.850
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	45.120
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	39.270
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	55.030
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	56.390
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	40.740
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	47.550
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	57.190
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	44.560
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	94.190
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	94.190
SRP279888	Gastro	Gastrodia elata tuber	19.43
	Juven	Juvenile tuber	3.35
	Mother_Gastro	Mother tuber of Gastrodia elata	176.07
	Mother_Juven	Mother tuber of Juvenile	54.84