Detail information of GWHGAAEX016980/evm.TU.scaffold_8.2
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428225220|ref|YP_007109317.1| | 4.00E-69 | multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407] |
| KOG | KOG0519 | 0 | Sensory transduction histidine kinase |
| nr | gi|602182594|gb|AHN91809.1| | 0 | ethylene response sensor 2 [Oncidium hybrid cultivar] |
| Swissprot | tr|Q9M7M1|ETR1_PRUPE | 0 | Ethylene receptor |
| trEMBL | tr|X2KXS8|X2KXS8_ONCHC | 0 | Ethylene response sensor 2 {ECO:0000313|EMBL:AHN91809.1} |
| TAIR | AT1G66340 | 0 | Signal transduction histidine kinase, hybrid-type, ethylene sensor |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000004 | 427803 | 445450 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016980
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01590.25 | GAF | 158 | 307 | 7.30E-16 |
| PF00512.24 | HisKA | 343 | 408 | 1.40E-15 |
| PF02518.25 | HATPase_c | 455 | 586 | 4.00E-32 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14509 | ETR, ERS | MAPK signaling pathway - plant | map04016 |
| Plant hormone signal transduction | map04075 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016310 | Biological Process | phosphorylation |
| GO:0007165 | Biological Process | signal transduction |
| GO:0005515 | Molecular Function | protein binding |
| GO:0000155 | Molecular Function | phosphorelay sensor kinase activity |
| GO:0016772 | Molecular Function | transferase activity, transferring phosphorus-containing groups |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 16.870 |
| SRR2545915 | Juvenile tuber | 19.010 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 19.560 |
| SRR5643514 | five period of Gastrodia elata | 22.720 | |
| SRR5643515 | five period of Gastrodia elata | 20.000 | |
| SRR5643524 | five period of Gastrodia elata | 21.230 | |
| SRR5643525 | five period of Gastrodia elata | 20.250 | |
| SRR5643528 | five period of Gastrodia elata | 17.950 | |
| SRR5643658 | five period of Gastrodia elata | 21.950 | |
| SRR5643659 | five period of Gastrodia elata | 16.170 | |
| SRR5643660 | five period of Gastrodia elata | 17.680 | |
| SRR5643661 | five period of Gastrodia elata | 15.850 | |
| SRR5643662 | five period of Gastrodia elata | 17.840 | |
| SRR5643663 | five period of Gastrodia elata | 17.010 | |
| SRR5643664 | five period of Gastrodia elata | 12.940 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 19.880 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 23.900 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 23.820 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 19.760 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.380 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 15.130 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 19.770 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.540 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 25.620 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 22.450 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 27.240 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 27.240 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.26 |
| Juven | Juvenile tuber | 19.56 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 20.17 | |
| Mother_Juven | Mother tuber of Juvenile | 16.68 |