Detail information of GWHGAAEX016982/evm.TU.scaffold_8.4


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|170290521|ref|YP_001737337.1|4.00E-35small GTP-binding protein [Candidatus Korarchaeum cryptofilum OPF8]
KOGKOG00705.00E-131GTP-binding ADP-ribosylation factor Arf1
nrgi|297736783|emb|CBI25984.3|9.32E-131unnamed protein product [Vitis vinifera]
Swissprottr|P51823|ARF2_ORYSJ6.00E-132ADP-ribosylation factor 2
trEMBLtr|F6HE24|F6HE24_VITVI3.00E-131Putative uncharacterized protein {ECO:0000313|EMBL:CCB50276.1}
TAIRAT3G622905.00E-131ADP-ribosylation factor A1E

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000004688259694907-
Transcript Sequence

Network for GWHGAAEX016982

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00025.20Arf51773.60E-80
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07937ARF1 Phospholipase D signaling pathway map04072
Endocytosismap04144

Gene Ontology

GO term OntologyName
GO:0005525Molecular FunctionGTP binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms827.620
SRR2545915Juvenile tuber830.740
SRP108465SRR5643513five period of Gastrodia elata535.990
SRR5643514five period of Gastrodia elata518.750
SRR5643515five period of Gastrodia elata555.580
SRR5643524five period of Gastrodia elata522.250
SRR5643525five period of Gastrodia elata982.250
SRR5643528five period of Gastrodia elata761.110
SRR5643658five period of Gastrodia elata861.640
SRR5643659five period of Gastrodia elata702.740
SRR5643660five period of Gastrodia elata691.690
SRR5643661five period of Gastrodia elata680.650
SRR5643662five period of Gastrodia elata718.940
SRR5643663five period of Gastrodia elata713.160
SRR5643664five period of Gastrodia elata707.060
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1392.340
SRR6049655Rhizomagastrodiae_C368-T10_good_1351.920
SRR6049656Rhizomagastrodiae_C368-T07_good_1401.230
SRR6049657Rhizomagastrodiae_C368-T07_good_1419.530
SRR6049658Rhizomagastrodiae_C368-T04_good_1333.200
SRR6049659Rhizomagastrodiae_C368-T04_good_1331.010
SRR6049660Rhizomagastrodiae_C368-T01_good_1332.440
SRR6049661Rhizomagastrodiae_C368-T04_good_1356.010
SRR6049662Rhizomagastrodiae_C368-T01_good_1389.420
SRR6049663Rhizomagastrodiae_C368-T01_good_1339.120
SRR6049664Rhizomagastrodiae_C368-T10_good_1429.500
SRR6049665Rhizomagastrodiae_C368-T10_good_1429.500
SRP279888GastroGastrodia elata tuber 662.14
JuvenJuvenile tuber548.19
Mother_GastroMother tuber of Gastrodia elata 451.15
Mother_JuvenMother tuber of Juvenile 361.42