Gene detail

Detail information of GWHGAAEX016986/evm.TU.scaffold_8.13

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1816	1.00E-147	Ubiquitin fusion-degradation protein
nr	gi\|743854559\|ref\|XP_010940943.1\|	6.68E-166	PREDICTED: ubiquitin fusion degradation protein 1 homolog [Elaeis guineensis]
trEMBL	tr\|B3TLZ5\|B3TLZ5_ELAGV	2.00E-166	Ubiquitin fusion degradation protein {ECO:0000313\|EMBL:ACF06576.1}
TAIR	AT2G21270	1.00E-147	ubiquitin fusion degradation 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000004	1037426	1042730	+

Transcript Sequence
>GWHTAAEX016986 ACCTTTTTTTTCTCTAGCCTACAGCACACGGGTTCCGTCGGAAGGAATTACTCTTTACCCTTTCTCTTCTGAGTCCGACGCTTTCCTCTCCTCCCGCTCTTCCTGCGCGCTGTTCTTTTCGTGCGATCCCTCTCCAGATCAGAACTCTGCAATCTTCTCTCCCGCGACATCTCTTCCTCTTCTCCTTCATCGGGTTTGCTCAGGGTTCAAGTGCTGCTATTTGAGCAAAAATGTATTTTGACAGATACGATTACCTTGGAAATTCTTTTGAACAGACATATCGTTGCTACCCAACATCCTTTATTGACAAGCCGCAGCTGGAAGGTGGTGACAAAATTATAATGCCTCCCTCTGCACTCGACCGTCTTGCATCTTTGCATATTGAGTATCCGATGTTGTTTGAACTGTGCAATGCGGCGACCAATCGGATTTCTCATTGCGGTGTGCTAGAGTTCATTGCTGAGGAAGGGATGGTTTACATGCCATACTGGATGATGCAAAATTTGCTTCTACAAGAAGGGGACATTGTGCGAATTAAGAATGCCACTCTCCCGAAGGGAACATATGTCAAGCTGCAGCCACACACAAAAGACTTCTTGGATATTTCGAATCCTAAGGCCATCTTGGAAACTACATTGAGGAACTATTCTTGCTTGACTGGAGGCGACAGTATCATGGTTCCATATAACAATAAAAAGTATTACATTGATATAGTTGAAACAAAGCCCTCTTCTGCAATTAGCATCATTGAGACAGATTGTGAGGTGGATTTTGCACCCCCACTTGACTACAAAGAGCCAGAACGATCTCATTCATCCTTTCTCTCTAATAGAGCACAAGGTCAAGCTCCAGTTCAAGATGCTCAAAATGCTGAACCTGAGGCCGAGCCAAAGTTCAACCCTTTCAGTGGTTCTGCTAGACGTTTGGATGGGAAGCCTTCAACTCAAGCTTCCAGTACTATCCCAGACCATGCCAAATACGGTCAGTCAGAAACAGCTTCAACAAAGAGCTCCATCACAGCTGCATCACCGAGCTCTTCTTCTTCACATCAGATCTCAGGGAAGCTTGTCTTTGGTTCAAACCCCAGACTTGCCCCCAAGGAAGATCAGAAGGTGCAGAAGAAAGAAGAACCTCCAACGGAAGAAGAATCCAAATTTCAGGCATTCACTGGGAAAAAGTACTCCTTGAAGGCCTGATAGTTGAGCTTTTAGCATATCAGCATATGCCTTATGAAATGACTTGTAGTGTTCATATTTACATACAGCCATGTTGTACCCTTTTTGTGCTGCTATCCTCTCCACAAGCTACAAGCTGGGGTAATTTATCTATATTTGTAATCTAATAGCAGAGATGTGCTACATTAGTTTTTGTGCAGAATTTATTGGGACAAGATCTCTTATAATATGAATGCTTCTACCCTATGGGAGATAGCATATATCAGCCTTATAGGAGAACCGACGTTCGGCTCAATATTGTGTTGCGTGCCGCCGAGTCATATAGATTATTTCAATCTTTACCTACTTTTTTAAGGATATCTATACTTATCAATTTCTTCCAAAAATAAATAATTTATTTTCAATTTCTTTTTTTCCCAA

Network for GWHGAAEX016986

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03152.13	UFD1	13	184	4.50E-80

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14016	UFD1	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	61.520
SRP064423	SRR2545915	Juvenile tuber	74.260
SRP108465	SRR5643513	five period of Gastrodia elata	59.730
	SRR5643514	five period of Gastrodia elata	66.450
	SRR5643515	five period of Gastrodia elata	63.720
	SRR5643524	five period of Gastrodia elata	73.490
	SRR5643525	five period of Gastrodia elata	103.150
	SRR5643528	five period of Gastrodia elata	135.330
	SRR5643658	five period of Gastrodia elata	100.960
	SRR5643659	five period of Gastrodia elata	57.380
	SRR5643660	five period of Gastrodia elata	53.920
	SRR5643661	five period of Gastrodia elata	63.160
	SRR5643662	five period of Gastrodia elata	67.480
	SRR5643663	five period of Gastrodia elata	55.080
	SRR5643664	five period of Gastrodia elata	57.610
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	61.580
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	75.360
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	56.580
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	54.950
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	62.270
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	74.410
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	60.380
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	56.630
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	61.850
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	62.690
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	68.700
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	68.700
SRP279888	Gastro	Gastrodia elata tuber	61.96
	Juven	Juvenile tuber	87.41
	Mother_Gastro	Mother tuber of Gastrodia elata	157.28
	Mother_Juven	Mother tuber of Juvenile	108.47