Detail information of GWHGAAEX016988/evm.TU.scaffold_8.19


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|268317750|ref|YP_003291469.1|4.00E-117AMP-dependent synthetase and ligase [Rhodothermus marinus DSM 4252]
KOGKOG11760Acyl-CoA synthetase
nrgi|544590485|gb|AGW24660.1|04-coumarate:coenzyme A ligase [Ornithogalum saundersiae]
Swissprottr|O24145|4CL1_TOBAC04-coumarate--CoA ligase 1
trEMBLtr|U3N732|U3N732_9ASPA04-coumarate:coenzyme A ligase {ECO:0000313|EMBL:AGW24660.1}
TAIRAT3G2124004-coumarate:CoA ligase 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000412659531268180+
Transcript Sequence

Network for GWHGAAEX016988

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00501.27AMP-binding364456.70E-106
PF13193.5AMP-binding_C4545292.60E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K019044CL Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Ubiquinone and other terpenoid-quinone biosynthesismap00130
Phenylpropanoid biosynthesismap00940

Gene Ontology

GO term OntologyName
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms103.560
SRR2545915Juvenile tuber26.600
SRP108465SRR5643513five period of Gastrodia elata4.460
SRR5643514five period of Gastrodia elata1.570
SRR5643515five period of Gastrodia elata31.990
SRR5643524five period of Gastrodia elata21.900
SRR5643525five period of Gastrodia elata3.870
SRR5643528five period of Gastrodia elata182.120
SRR5643658five period of Gastrodia elata18.990
SRR5643659five period of Gastrodia elata29.950
SRR5643660five period of Gastrodia elata2.790
SRR5643661five period of Gastrodia elata10.970
SRR5643662five period of Gastrodia elata34.850
SRR5643663five period of Gastrodia elata11.780
SRR5643664five period of Gastrodia elata34.850
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_123.060
SRR6049655Rhizomagastrodiae_C368-T10_good_16.100
SRR6049656Rhizomagastrodiae_C368-T07_good_16.680
SRR6049657Rhizomagastrodiae_C368-T07_good_112.770
SRR6049658Rhizomagastrodiae_C368-T04_good_17.700
SRR6049659Rhizomagastrodiae_C368-T04_good_19.600
SRR6049660Rhizomagastrodiae_C368-T01_good_136.160
SRR6049661Rhizomagastrodiae_C368-T04_good_111.380
SRR6049662Rhizomagastrodiae_C368-T01_good_19.040
SRR6049663Rhizomagastrodiae_C368-T01_good_117.480
SRR6049664Rhizomagastrodiae_C368-T10_good_110.840
SRR6049665Rhizomagastrodiae_C368-T10_good_110.840
SRP279888GastroGastrodia elata tuber 1.75
JuvenJuvenile tuber1.34
Mother_GastroMother tuber of Gastrodia elata 301.55
Mother_JuvenMother tuber of Juvenile 115.64