Detail information of GWHGAAEX016989/evm.TU.scaffold_8.21
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3002 | 4.00E-161 | Zn finger protein |
| nr | gi|731414483|ref|XP_010659159.1| | 0 | PREDICTED: E3 ubiquitin-protein ligase SINAT5 isoform X1 [Vitis vinifera] |
| Swissprot | tr|Q8S3N1|SINA5_ARATH | 1.00E-162 | E3 ubiquitin-protein ligase SINAT5 |
| trEMBL | tr|A5CAJ5|A5CAJ5_VITVI | 0 | E3 ubiquitin-protein ligase {ECO:0000256|RuleBase:RU201113} |
| TAIR | AT4G27880 | 4.00E-161 | Protein with RING/U-box and TRAF-like domains |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000004 | 1321591 | 1367250 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016989
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03145.15 | Sina | 101 | 300 | 1.20E-72 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K04506 | SIAH1 | Ubiquitin mediated proteolysis | map04120 |
| MAPK signaling pathway - fly | map04013 | ||
| Wnt signaling pathway | map04310 | ||
| p53 signaling pathway | map04115 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0007275 | Biological Process | multicellular organism development |
| GO:0006511 | Biological Process | ubiquitin-dependent protein catabolic process |
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.690 |
| SRR2545915 | Juvenile tuber | 1.910 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.990 |
| SRR5643514 | five period of Gastrodia elata | 3.580 | |
| SRR5643515 | five period of Gastrodia elata | 1.020 | |
| SRR5643524 | five period of Gastrodia elata | 3.700 | |
| SRR5643525 | five period of Gastrodia elata | 0.500 | |
| SRR5643528 | five period of Gastrodia elata | 0.670 | |
| SRR5643658 | five period of Gastrodia elata | 0.220 | |
| SRR5643659 | five period of Gastrodia elata | 0.310 | |
| SRR5643660 | five period of Gastrodia elata | 0.130 | |
| SRR5643661 | five period of Gastrodia elata | 0.300 | |
| SRR5643662 | five period of Gastrodia elata | 0.080 | |
| SRR5643663 | five period of Gastrodia elata | 0.160 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.840 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.270 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.590 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.670 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.150 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.790 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.140 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.840 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.400 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.510 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.380 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.380 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.14 |
| Juven | Juvenile tuber | 1.61 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.35 | |
| Mother_Juven | Mother tuber of Juvenile | 0.83 |