Detail information of GWHGAAEX016990/evm.TU.scaffold_8.25
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|530780662|ref|YP_008432470.1| | 3.00E-06 | hypothetical protein N186_05570 [Thermofilum sp. 1910b] |
| KOG | KOG0504 | 0 | FOG: Ankyrin repeat |
| nr | gi|743845547|ref|XP_010938612.1| | 0 | PREDICTED: regulatory protein NPR5-like [Elaeis guineensis] |
| Swissprot | tr|Q9ZVC2|NPR5_ARATH | 0 | Regulatory protein NPR5 |
| trEMBL | tr|F6HLP4|F6HLP4_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB55300.1} |
| TAIR | AT2G41370 | 0 | Ankyrin repeat family protein / BTB/POZ domain-containing protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000004 | 1696968 | 1699690 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016990
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00651.30 | BTB | 14 | 110 | 7.10E-12 |
| PF11900.7 | DUF3420 | 199 | 256 | 3.10E-11 |
| PF12796.6 | Ank_2 | 262 | 344 | 8.30E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | TRAF |
| Ubiquitin Family | BTB |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14508 | NPR1 | Plant hormone signal transduction | map04075 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.190 |
| SRR2545915 | Juvenile tuber | 1.040 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.480 |
| SRR5643514 | five period of Gastrodia elata | 5.670 | |
| SRR5643515 | five period of Gastrodia elata | 2.900 | |
| SRR5643524 | five period of Gastrodia elata | 4.380 | |
| SRR5643525 | five period of Gastrodia elata | 0.340 | |
| SRR5643528 | five period of Gastrodia elata | 0.100 | |
| SRR5643658 | five period of Gastrodia elata | 0.040 | |
| SRR5643659 | five period of Gastrodia elata | 0.780 | |
| SRR5643660 | five period of Gastrodia elata | 0.310 | |
| SRR5643661 | five period of Gastrodia elata | 1.050 | |
| SRR5643662 | five period of Gastrodia elata | 0.850 | |
| SRR5643663 | five period of Gastrodia elata | 0.620 | |
| SRR5643664 | five period of Gastrodia elata | 0.580 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.610 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.090 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.490 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.560 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.350 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.690 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.470 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.500 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.620 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.590 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.450 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.450 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.52 |
| Juven | Juvenile tuber | 0.53 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.37 | |
| Mother_Juven | Mother tuber of Juvenile | 0.53 |