Detail information of GWHGAAEX017000/evm.TU.scaffold_8.38
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|20808602|ref|NP_623773.1| | 8.00E-79 | exonuclease III [Thermoanaerobacter tengcongensis MB4] |
| KOG | KOG1294 | 1.00E-178 | Apurinic/apyrimidinic endonuclease and related enzymes |
| nr | gi|743864289|ref|XP_010904542.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: apurinic endonuclease-redox protein [Elaeis guineensis] |
| Swissprot | tr|P45951|ARP_ARATH | 3.00E-179 | Apurinic endonuclease-redox protein |
| trEMBL | tr|V7BKI4|V7BKI4_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW17560.1} |
| TAIR | AT2G41460 | 1.00E-178 | apurinic endonuclease-redox protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000004 | 2363542 | 2413597 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017000
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03372.22 | Exo_endo_phos | 227 | 475 | 1.90E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01142 | E3.1.11.2, xthA | Base excision repair | map03410 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006281 | Biological Process | DNA repair |
| GO:0004519 | Molecular Function | endonuclease activity |
| GO:0004518 | Molecular Function | nuclease activity |
| GO:0003677 | Molecular Function | DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 12.200 |
| SRR2545915 | Juvenile tuber | 20.420 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.650 |
| SRR5643514 | five period of Gastrodia elata | 15.240 | |
| SRR5643515 | five period of Gastrodia elata | 14.300 | |
| SRR5643524 | five period of Gastrodia elata | 15.630 | |
| SRR5643525 | five period of Gastrodia elata | 7.880 | |
| SRR5643528 | five period of Gastrodia elata | 5.910 | |
| SRR5643658 | five period of Gastrodia elata | 7.060 | |
| SRR5643659 | five period of Gastrodia elata | 15.620 | |
| SRR5643660 | five period of Gastrodia elata | 13.820 | |
| SRR5643661 | five period of Gastrodia elata | 13.920 | |
| SRR5643662 | five period of Gastrodia elata | 7.320 | |
| SRR5643663 | five period of Gastrodia elata | 9.690 | |
| SRR5643664 | five period of Gastrodia elata | 6.960 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 27.140 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 16.570 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 24.470 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 30.290 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 36.010 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 44.030 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 35.490 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 37.170 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 25.120 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 28.410 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.940 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.940 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 11.75 |
| Juven | Juvenile tuber | 14.42 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 10.06 | |
| Mother_Juven | Mother tuber of Juvenile | 7.93 |