Gene detail

Detail information of GWHGAAEX017001/evm.TU.scaffold_8.39

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|695076300\|ref\|XP_009385433.1\|	1.19E-31	PREDICTED: uncharacterized protein LOC103972797 isoform X1 [Musa acuminata subsp. malaccensis]
trEMBL	tr\|I1HSJ2\|I1HSJ2_BRADI	5.00E-32	Uncharacterized protein {ECO:0000313\|EnsemblPlants:BRADI2G52560.1}
TAIR	AT5G03990	9.00E-26	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000004	2468271	2480555	+

Transcript Sequence
>GWHTAAEX017001 AATGATCATGTTCTATGCTTCTTAACTAGAGTGAGGGCATAGGATGGTTCACTCAAACTCAAGGTAATATGGTCTTAAGATAAATTAGAATGGTGCTGCGCTTCCTCGTCTTTCTTGAGTGCATGTCTCCGCGCTTGCACCATCTCAAATCAGTATCTTCTCTTCGAGCTGTTATCTTACTTGGCTACGCTCTTACCTTCGATCAGCCTACGATCTTTTGTTGACTTTCAATCTTCCGTTCATTCAGTTTTTTGGGAAGATGGGCGAAAAGAGGCGATGGGTGAATTGGGATCAAACGAATCGTGATGACGGTAGACGATGGCCCCCGAAATCACCTATACGATGGGGACAGCAGAAATATTCCGGATCTAGTGCTTGGAGGGATGAAGAAGGCTCAACGAAACCAGTTTCTACTGGATGGGCTTCTTCATGGGAAAGGACATTTTGCAGTTATGTGTGCCGAGTTCCCTGGAGAAAAATATGCGATGCTCCGAGAGTACTGTACATCTACAAGAACGTTACTGAATGGGATGATTCAGCGGGGCAAGAAGCATTTGGGAATGCAAAAGCTCGTTATTGGGCGAAGATTAATCATCTCCCTTGCAATATTCCGATGCCTGACCCCTACATGTACATTGATGAAAAAGTAAATTTCGATGCTTTTATCGATCCAAATCTCGTGGACGATTTAGAAAGAAGTATGTTTAATATGGATATTGATAAAAGAGAATCTACTGATAGCCAATTGGATTCTTCGGAACATGAGCGGACGGCACATGAGCGGACACCTGTAGTAGCATGCGACCGTGAGGCTGAGCAATCCTCCTCAAATTGGGATAAGTATGTTGTAAAGCCGCTTGCAGCGAGGCCATGTGGCTGTGAGGCAAAGCAATCCTCCTCAAATTGGGATAAGTATATTGAAAAGCCAGCTGCAGTTTCGGGATGGGATGGTTGGGGTGATGGATTTGTGCGATGTGATTCATGGGAGGGCAAAAGAGAAACACAAGCTAGCTGGAAAGATCAGGATGATTCATGGAGGCATCAGCAGAGCTGGAAGAATGGAAGAAACACTAGTTGGAAGTATTCTGGTGGAAACAACTGGGGTAGTGACTACTCATTTGAGAAGGTGCAGCAGCAGAGACCATGGCAGCATGGCCCGTTTTGGGGCACAAGGAGTTATCAAACAGCAACAGGTTATTCCGGTGCTCCTTTTCAAAGAGAGAATGCAGTGTCCTAGCATGCAGAATCATATATCTGAATTTTTTATACTGTAAGAGTGCATTAATATATATATATATATATATATATACTAATGATGTTGTTTCTTTTTGTTGAGTGTGTATCACAATTGCCGCCAGCGATTGCTGAACTATGCAACAATGAGCAGGCAATATTTAAATCTTAATTTGGATGCTATACTTTGTGTGTTGCTGTCGAATAGTGATGAGCTTTTGATGACTGATGATTTCCAAATTTTGAACAATGTTCCTTTATTGCTCGCGTGAAATTG

Network for GWHGAAEX017001

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	97.190
SRP064423	SRR2545915	Juvenile tuber	123.570
SRP108465	SRR5643513	five period of Gastrodia elata	34.910
	SRR5643514	five period of Gastrodia elata	31.690
	SRR5643515	five period of Gastrodia elata	32.540
	SRR5643524	five period of Gastrodia elata	30.750
	SRR5643525	five period of Gastrodia elata	59.350
	SRR5643528	five period of Gastrodia elata	49.340
	SRR5643658	five period of Gastrodia elata	62.400
	SRR5643659	five period of Gastrodia elata	53.010
	SRR5643660	five period of Gastrodia elata	55.450
	SRR5643661	five period of Gastrodia elata	56.120
	SRR5643662	five period of Gastrodia elata	75.790
	SRR5643663	five period of Gastrodia elata	71.650
	SRR5643664	five period of Gastrodia elata	82.770
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	53.720
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	35.360
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	56.680
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	72.580
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	66.720
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	75.910
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	60.170
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	67.260
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	45.460
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	56.470
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	39.220
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	39.220
SRP279888	Gastro	Gastrodia elata tuber	69.53
	Juven	Juvenile tuber	61.71
	Mother_Gastro	Mother tuber of Gastrodia elata	41.06
	Mother_Juven	Mother tuber of Juvenile	49.06