Gene detail

Detail information of GWHGAAEX017004/evm.TU.scaffold_8.43

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|11499558\|ref\|NP_070800.1\|	5.00E-131	proteasome-activating nucleotidase [Archaeoglobus fulgidus DSM 4304]
KOG	KOG0726	0	26S proteasome regulatory complex, ATPase RPT2
nr	gi\|743809535\|ref\|XP_010928641.1\|	0	PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Elaeis guineensis]
Swissprot	tr\|Q9SZD4\|PRS4A_ARATH	0	26S proteasome regulatory subunit 4 homolog A
trEMBL	tr\|W1PHT9\|W1PHT9_AMBTC	0	Uncharacterized protein {ECO:0000313\|EMBL:ERN07269.1}
TAIR	AT4G29040	0	regulatory particle AAA-ATPase 2A

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000004	2605988	2630647	+

Transcript Sequence
>GWHTAAEX017004 CACTCAGCAAAAGAACCTATTTCCGTAGACCAGTCGAATGTTAAGGTGCTGAAATTTGACGGGCGGGAGGTGCAATATCTAATCTTCACAAACCCTAGGTCTCTCTTAGTCCTCGCAAAACCTAGACGAGCAGAATGGGACAGGGAACCCCCGGCGGCATGAACAAACAAGGCCTTCCCGGCGATCGGAAGCACGACGGTGACAAGAAGGACAAAAAGTTTGAGCCTGCAGCGCCGCCTTCTCGTGTTGGACGGAAGCAGCGCAAGCAGAAAGGCCCGGAGGCTGCTGCGCGACTGCCGACGGTGACGCCACTGACCAAGTGCAAACTTCGTCTCCTAAAGCTCGAGCGAATCAAGGACTATCTCCTCATGGAAGAGGAATTCGTTACCAACCAGGAGCGTCTCAAGCCCCACGAGGACAAGAATGAGGAAGATCGATCCAAGGTTGATGATCTCCGCGGATCCCCTATGAGCGTTGGGAACCTCGAGGAGCTTATTGACGAGAACCATGCGATCGTATCATCATCAGTTGGACCCGAGTATTACGTGAGCATTCTTTCATTTGTGGACAAGGATCAGCTAGAGCCTGGTTGTGCCATACTCATGCATAACAAGGTTCTGTCTGTTGTTGGGCTACTACAAGATGAAGTTGATCCTATGGTTTCAGTGATGAAAGTAGAGAAAGCTCCATTGGAATCTTATGCTGACATTGGTGGTCTGGATGCTCAAATTCAAGAAATCAAAGAAGCAGTTGAACTTCCTCTAACCCACCCTGAGCTCTATGAGGACATTGGTATTAAACCACCCAAAGGAGTCATACTCTATGGAGAACCTGGAACTGGGAAAACGTTACTTGCCAAAGCTGTCGCTAATTCAACTTCTGCAACATTCCTGCGTGTTGTTGGAAGTGAATTAATTCAAAAATACTTGGGTGATGGTCCGAAATTAGTTAGGGAGCTTTTTAGAGTAGCGGATGATCTTTCTCCGTCAATTGTATTTATTGATGAGATCGATGCAGTTGGCACTAAAAGATATGATGCTCATTCCGGAGGAGAGCGGGAGATACAGAGAACTATGTTGGAATTGTTGAATCAATTAGACGGTTTTGACTCAAGGGGTGATGTTAAAGTAATTCTTGCCACAAATAGAATTGAAAGTCTGGATCCAGCCTTACTTCGACCTGGACGCATTGATAGGAAGATTGAGTTTCCTCTCCCAGATATCAAAACACGAAGACGCATTTTTCAGATACATACTTCTAGGATGACACTAGCTGATGATGTCAATTTAGAGGAATTTGTTATGACAAAAGATGAATTTTCTGGCGCTGATATAAAGGCAATATGTACTGAAGCTGGATTGCTTGCTTTAAGGGAACGCAGAATGAAGGTAACTCATGCAGACTTTAAGAAGGCAAAGGAGAAGGTTATGTTTAAGAAGAAGGAAGGCGTACCTGAGGGGCTTTATATGTGATGATAATATTCTGTCTTTCACAAGGACAACTCTGGTACTAAATGAGCTCATCGAAGGCAGCTTTTCGGCTGCGAAGTGGTGGGCTTTGTTTTTCTGTGGGATTTATGCTTTGATATCACAACTTTATGGCTGTTTTTTCGCTGTAGGATATTTTGAGCAGAACAATGAAAGCGCCAAATAGATTTATTTGCATACGATTTTTAATGTTATGAGCCCTAATTATACTTACCCTTTATACAATCTGATATTTTAATTTTATATTTAAATAAATCTCTTTCTTTCTCATTCTCTCCCTAAAACTAATAACAATATACATACATATATATTGCTTTATTAAAAGAGTATGAAAAATGAAAACGATTTAATTTGTAGCTGTTTAAGGCGTCCTTGCTGTATTAATTTAGCTCGAGCTTTTTGCATAAATCATTGGCAAGTACTAGTGAGTTGGAAGTTTTAACTTTTCATGAAAGTTTTTACTACAAAGCACAATATACAATGGCATTGACGTCAATGGTAGAGAGGACATTGTTTAGTTTAGTAATTATTTTGTATCGCTGCTTTATATCTTTCAGCGTTTTAATGATAAATGCATAGTACTAGTAATGTTTGATATATGTTTGTATTTAACTTGTAAGCACAATAAATTACTACTGAAGGAACAGTTGAGCAACCTGTAAGCTAACCTCTTCCAGTCAAGCATCACTATGAAAGTCATCCAATTGCTAATCTGAAGATAAAGAGTTCCTGAGCTATTTGAGCTAAAGCAGATCTTGTTCGAGTGTCAGAACACCTAGGAATATTTAAGAGAGGTGCATGCTTCAAGCTCAGAACAATGGATTCTGTTATCAGGGAAGTGTCAATCAAAAGATATTATCCCAAAGTTGGCAGGAATAAGCTGAAGTTTTCAATAACTCAATTGATAGCTAGATTGAGACCAATTCATTTTATATTTTTTGTGACAAGACCATCCGCTTGCCCCAAGTTGGAGATAGATAGTTTTTGTGAGTTAGATCATAATTGAACATGTCAAAGAAGAGTGTTATAAAGTATTTTATTCTAATTGAATGGTA

Network for GWHGAAEX017004

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00004.28	AAA	227	360	3.20E-40

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03062	PSMC1, RPT2	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0030163	Biological Process	protein catabolic process
GO:0005524	Molecular Function	ATP binding
GO:0016787	Molecular Function	hydrolase activity
GO:0005737	Cellular Component	cytoplasm

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	114.160
SRP064423	SRR2545915	Juvenile tuber	135.480
SRP108465	SRR5643513	five period of Gastrodia elata	141.350
	SRR5643514	five period of Gastrodia elata	165.560
	SRR5643515	five period of Gastrodia elata	151.700
	SRR5643524	five period of Gastrodia elata	161.010
	SRR5643525	five period of Gastrodia elata	121.110
	SRR5643528	five period of Gastrodia elata	162.710
	SRR5643658	five period of Gastrodia elata	114.130
	SRR5643659	five period of Gastrodia elata	165.260
	SRR5643660	five period of Gastrodia elata	166.610
	SRR5643661	five period of Gastrodia elata	154.550
	SRR5643662	five period of Gastrodia elata	137.440
	SRR5643663	five period of Gastrodia elata	148.280
	SRR5643664	five period of Gastrodia elata	146.010
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	123.220
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	183.960
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	133.970
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	106.610
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	96.350
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	95.370
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	107.860
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	98.420
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	155.130
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	136.440
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	176.930
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	176.930
SRP279888	Gastro	Gastrodia elata tuber	157.32
	Juven	Juvenile tuber	180.24
	Mother_Gastro	Mother tuber of Gastrodia elata	150.26
	Mother_Juven	Mother tuber of Juvenile	169.87