Detail information of GWHGAAEX017006/evm.TU.scaffold_8.46


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG21360Transcriptional regulators binding to the GC-rich sequences
nrgi|743873013|ref|XP_010906711.1|0PREDICTED: PAX3- and PAX7-binding protein 1-like [Elaeis guineensis]
trEMBLtr|M0TI48|M0TI48_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P16610_001}
TAIRAT5G085500GC-rich sequence DNA-binding factor-like protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000427406692770853+
Transcript Sequence

Network for GWHGAAEX017006

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF15458.5NTR21163332.70E-12
PF07842.11GCFC5917942.20E-25
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms29.910
SRR2545915Juvenile tuber19.770
SRP108465SRR5643513five period of Gastrodia elata14.850
SRR5643514five period of Gastrodia elata14.310
SRR5643515five period of Gastrodia elata16.260
SRR5643524five period of Gastrodia elata13.650
SRR5643525five period of Gastrodia elata17.980
SRR5643528five period of Gastrodia elata21.210
SRR5643658five period of Gastrodia elata19.450
SRR5643659five period of Gastrodia elata18.840
SRR5643660five period of Gastrodia elata18.860
SRR5643661five period of Gastrodia elata16.960
SRR5643662five period of Gastrodia elata17.700
SRR5643663five period of Gastrodia elata17.980
SRR5643664five period of Gastrodia elata19.220
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_120.140
SRR6049655Rhizomagastrodiae_C368-T10_good_114.300
SRR6049656Rhizomagastrodiae_C368-T07_good_119.400
SRR6049657Rhizomagastrodiae_C368-T07_good_122.210
SRR6049658Rhizomagastrodiae_C368-T04_good_121.120
SRR6049659Rhizomagastrodiae_C368-T04_good_123.930
SRR6049660Rhizomagastrodiae_C368-T01_good_122.630
SRR6049661Rhizomagastrodiae_C368-T04_good_121.920
SRR6049662Rhizomagastrodiae_C368-T01_good_122.000
SRR6049663Rhizomagastrodiae_C368-T01_good_123.920
SRR6049664Rhizomagastrodiae_C368-T10_good_116.130
SRR6049665Rhizomagastrodiae_C368-T10_good_116.130
SRP279888GastroGastrodia elata tuber 16.71
JuvenJuvenile tuber18.84
Mother_GastroMother tuber of Gastrodia elata 18.92
Mother_JuvenMother tuber of Juvenile 19.70