Detail information of GWHGAAEX017008/evm.TU.scaffold_8.49
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|312129985|ref|YP_003997325.1| | 1.00E-20 | tex-like protein [Leadbetterella byssophila DSM 17132] |
| KOG | KOG1856 | 0 | Transcription elongation factor SPT6 |
| nr | gi|743786764|ref|XP_010922250.1| | 0 | PREDICTED: transcription elongation factor SPT6 [Elaeis guineensis] |
| trEMBL | tr|M0S424|M0S424_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P00830_001} |
| TAIR | AT1G65440 | 0 | global transcription factor group B1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000004 | 2843371 | 2865827 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017008
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14632.5 | SPT6_acidic | 37 | 124 | 6.00E-16 |
| PF14641.5 | HTH_44 | 316 | 432 | 2.10E-13 |
| PF14639.5 | YqgF | 750 | 902 | 7.10E-15 |
| PF14635.5 | HHH_7 | 906 | 1007 | 2.00E-17 |
| PF14878.5 | DLD | 1021 | 1134 | 2.00E-33 |
| PF14633.5 | SH2_2 | 1224 | 1439 | 2.10E-71 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0032968 | Biological Process | positive regulation of transcription elongation from RNA polymerase II promoter |
| GO:0006139 | Biological Process | nucleobase-containing compound metabolic process |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0003677 | Molecular Function | DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 43.600 |
| SRR2545915 | Juvenile tuber | 47.500 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 47.430 |
| SRR5643514 | five period of Gastrodia elata | 50.100 | |
| SRR5643515 | five period of Gastrodia elata | 45.520 | |
| SRR5643524 | five period of Gastrodia elata | 52.820 | |
| SRR5643525 | five period of Gastrodia elata | 40.270 | |
| SRR5643528 | five period of Gastrodia elata | 41.600 | |
| SRR5643658 | five period of Gastrodia elata | 47.780 | |
| SRR5643659 | five period of Gastrodia elata | 51.930 | |
| SRR5643660 | five period of Gastrodia elata | 48.310 | |
| SRR5643661 | five period of Gastrodia elata | 47.850 | |
| SRR5643662 | five period of Gastrodia elata | 41.180 | |
| SRR5643663 | five period of Gastrodia elata | 47.390 | |
| SRR5643664 | five period of Gastrodia elata | 41.620 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 40.600 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 29.360 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 47.810 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 37.090 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 37.420 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 40.080 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 44.530 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 46.940 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 51.710 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 47.490 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 49.410 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 49.410 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 42.46 |
| Juven | Juvenile tuber | 58.14 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 31.55 | |
| Mother_Juven | Mother tuber of Juvenile | 42.32 |