Detail information of GWHGAAEX017013/evm.TU.scaffold_8.55
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|307152491|ref|YP_003887875.1| | 5.00E-44 | WD40 repeat-containing protein [Cyanothece sp. PCC 7822] |
| KOG | KOG4155 | 2.00E-180 | FOG: WD40 repeat |
| nr | gi|695002641|ref|XP_009381209.1| | 0 | PREDICTED: WD repeat-containing protein 61 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q3Y8L7|DAW1_CHLRE | 5.00E-26 | Dynein assembly factor with WDR repeat domains 1 |
| trEMBL | tr|M0S4C2|M0S4C2_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P01810_001} |
| TAIR | AT4G29830 | 2.00E-180 | Transducin/WD40 repeat-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000004 | 3122549 | 3128836 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017013
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12894.6 | ANAPC4_WD40 | 156 | 198 | 1.80E-06 |
| PF00400.31 | WD40 | 238 | 272 | 9.00E-08 |
| PF00400.31 | WD40 | 279 | 320 | 0.051 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12602 | WDR61, REC14, SKI8 | RNA degradation | map03018 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.490 |
| SRR2545915 | Juvenile tuber | 7.890 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 26.250 |
| SRR5643514 | five period of Gastrodia elata | 22.940 | |
| SRR5643515 | five period of Gastrodia elata | 19.770 | |
| SRR5643524 | five period of Gastrodia elata | 19.640 | |
| SRR5643525 | five period of Gastrodia elata | 20.470 | |
| SRR5643528 | five period of Gastrodia elata | 16.510 | |
| SRR5643658 | five period of Gastrodia elata | 17.610 | |
| SRR5643659 | five period of Gastrodia elata | 25.670 | |
| SRR5643660 | five period of Gastrodia elata | 29.180 | |
| SRR5643661 | five period of Gastrodia elata | 30.300 | |
| SRR5643662 | five period of Gastrodia elata | 27.170 | |
| SRR5643663 | five period of Gastrodia elata | 21.890 | |
| SRR5643664 | five period of Gastrodia elata | 26.110 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 29.990 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 48.430 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 38.860 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 34.970 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 31.820 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 30.940 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 36.450 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 35.160 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 45.890 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 40.890 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 41.660 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 41.660 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 27.71 |
| Juven | Juvenile tuber | 41.51 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 23.80 | |
| Mother_Juven | Mother tuber of Juvenile | 23.97 |