Gene detail

Detail information of GWHGAAEX017019/evm.TU.scaffold_8.62

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|695006130\|ref\|XP_009389543.1\|	9.53E-142	PREDICTED: novel plant SNARE 13-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9LRP1\|NPS13_ARATH	3.00E-132	Novel plant SNARE 13
trEMBL	tr\|M0S615\|M0S615_MUSAM	4.00E-142	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P07740_001}
TAIR	AT3G17440	1.00E-131	novel plant snare 13

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000004	3549959	3574953	+

Transcript Sequence
>GWHTAAEX017019 GGATTTTTCAAATTAGATACAGAGTGTAATTATGCGATCTTCTCTGCAATATTCTTTTTTTTTTTAGTGTTCAAATATTTCTCCTTCCAGCCAACGCCACTGCAATTTTGATCCGTCAAGCTTGCTAAAGAATGACGAACGTTCTCGGAATGACCACGGAAATGGAGCAGACAGACGGCGAGATCCACGACATCCTTCGCGCCCTTGCCAATGGGTTTCAAAAACTGGATAAGATCAAGGACTCTAATAGGCAAAGCAAACAGCTGGAGGAACTCACTGGGAAAATGAGGGAATGCAAGCGCCTAATAAAGGTGCTCGATATACAAGTTAAGGAAGCAGAAACTAAAAATGCTCCTGAAGCTAATAAGCAGCTCAATGACAGAAAACAAACCATGATCAAAGAGTTAAATTCATTTGTAGCCCTCAGGAAAACGTACTTGAGTAGCTTAGGCACCAAACGAGTAGAACTATTTAATATGGGAGCAGGAAGTAGTGATCATGGAGCTGATGAGAATGTTCAACTAGCATCAAATATGACTAATCAAGAGCTAATAAGTGCTGGCACAGAGGCAATGGAAGAGACTGATCAAGCGATTGAGCGTTCAAAAATGGTTGTGGAACAAACTATAGAAGTTGGAACACAAACAGTGGCAAATATGAAGGGTCAAACTGAACAAATGGGCCGCATTGTGAATGATCTTGACACAGTTAACTTTACGATAAAAAAGGCAAGTCAACTTGTCAAAGAGATTGGAAGACAGGTTTCAACTGATAAATGTATCATGTTTTTCTTGTTCCTAGTTGTTTGTGGTGTAATTGCAATCATAGTTGTCAAGATTGTAAACCCCAACAACAAGAACATCAGAGATATGCCTGGCCTTGCGCCTCCCGCTCCGACGTCGAGGAAGCTGCTATGGGCAAATGCCTTTTAAAACCATGCTTATTTTTTCATTCTTCATCCGCTGGCCGCGGGGCATGCTTTCGCATGTTATTCAATTAGTAATAATTCATGTGATGATTCTGTATGTGCTTCTGTGTATTAATTATTATTTGTAGAATCTTTATCTTCAATTTGCCAATCTGATATCTTTTTCCTTTGTATATTTTGCTGTAAAGACTGGATATCTCTGGTTTTGATATGTGAAATGTGAGGATATGTCTGCGTTCTGTTCTTATGAATGGATTCTGCATTGAGTTATATTTGTAATATAACTCTATAGCAATGAGAAGTTGGAACAATTTAATGTCGACTGCTTGCTATAAATGAGTTCCACTAAACTAAAAGTTCCGTAAAGGACTTCATAGGAGTGATTGTATGTAATCTCACTATAATTGTCTATAGAGATATTTAATATACTATAAAGGCTTGGAATGTGCATTTGAGTTGGCCTTTCAAGTTTTTTTATTTTCTTATTTTTTATGCTATCAGCGGTAGACTTATAGCTTATGTATGGGCACTCTAGTGCTCTATTTGAGTTGATGAATGCAAAGAGAAACTTGTTAAATTCTAGTGGTTTACTGTTAAATTCTTCATACCTCTATCATTTTCTTTAAAATCACCACATTAAAAGGTAAATGGCCTTTTGTTCATCTTGACATTTCTATTATCAATGGCAACATAAAGAATGAATATTTTATGGGGCTAATTGATCCTA

Network for GWHGAAEX017019

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12352.7	V-SNARE_C	149	209	2.60E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.660
SRP064423	SRR2545915	Juvenile tuber	6.060
SRP108465	SRR5643513	five period of Gastrodia elata	2.690
	SRR5643514	five period of Gastrodia elata	3.430
	SRR5643515	five period of Gastrodia elata	2.960
	SRR5643524	five period of Gastrodia elata	3.240
	SRR5643525	five period of Gastrodia elata	7.680
	SRR5643528	five period of Gastrodia elata	6.710
	SRR5643658	five period of Gastrodia elata	9.880
	SRR5643659	five period of Gastrodia elata	3.200
	SRR5643660	five period of Gastrodia elata	4.830
	SRR5643661	five period of Gastrodia elata	3.900
	SRR5643662	five period of Gastrodia elata	4.000
	SRR5643663	five period of Gastrodia elata	4.630
	SRR5643664	five period of Gastrodia elata	4.280
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.730
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.590
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.710
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.010
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.670
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.840
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.020
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.720
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.490
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.100
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.350
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.350
SRP279888	Gastro	Gastrodia elata tuber	5.32
	Juven	Juvenile tuber	2.98
	Mother_Gastro	Mother tuber of Gastrodia elata	7.61
	Mother_Juven	Mother tuber of Juvenile	4.98