Detail information of GWHGAAEX017020/evm.TU.scaffold_8.63
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|557828985|ref|YP_008801702.1| | 4.00E-158 | S-adenosylmethionine synthetase [Exiguobacterium sp. MH3] |
| KOG | KOG1506 | 0 | S-adenosylmethionine synthetase |
| nr | gi|566183200|ref|XP_002312296.2| | 0 | hypothetical protein POPTR_0008s09870g [Populus trichocarpa] |
| Swissprot | tr|A9PEK8|METK3_POPTR | 0 | S-adenosylmethionine synthase 3 |
| trEMBL | tr|B9HIH9|B9HIH9_POPTR | 0 | S-adenosylmethionine synthase {ECO:0000256|RuleBase:RU000541} |
| TAIR | AT1G02500 | 0 | S-adenosylmethionine synthetase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000004 | 3639470 | 3641407 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017020
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00438.19 | S-AdoMet_synt_N | 5 | 102 | 1.20E-42 |
| PF02772.15 | S-AdoMet_synt_M | 118 | 239 | 9.10E-46 |
| PF02773.15 | S-AdoMet_synt_C | 241 | 382 | 1.20E-61 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00789 | metK | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Biosynthesis of amino acids | map01230 | ||
| Cysteine and methionine metabolism | map00270 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006556 | Biological Process | S-adenosylmethionine biosynthetic process |
| GO:0004478 | Molecular Function | methionine adenosyltransferase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 147.250 |
| SRR2545915 | Juvenile tuber | 223.330 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 364.300 |
| SRR5643514 | five period of Gastrodia elata | 341.030 | |
| SRR5643515 | five period of Gastrodia elata | 303.160 | |
| SRR5643524 | five period of Gastrodia elata | 306.430 | |
| SRR5643525 | five period of Gastrodia elata | 260.850 | |
| SRR5643528 | five period of Gastrodia elata | 279.000 | |
| SRR5643658 | five period of Gastrodia elata | 244.110 | |
| SRR5643659 | five period of Gastrodia elata | 394.140 | |
| SRR5643660 | five period of Gastrodia elata | 457.750 | |
| SRR5643661 | five period of Gastrodia elata | 451.470 | |
| SRR5643662 | five period of Gastrodia elata | 407.420 | |
| SRR5643663 | five period of Gastrodia elata | 386.850 | |
| SRR5643664 | five period of Gastrodia elata | 351.100 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 440.090 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 696.470 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 643.590 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 617.210 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 341.410 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 289.930 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 617.190 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 567.900 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 594.420 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 423.890 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 509.540 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 509.540 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 411.11 |
| Juven | Juvenile tuber | 602.24 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 89.74 | |
| Mother_Juven | Mother tuber of Juvenile | 201.41 |