Detail information of GWHGAAEX017023/evm.TU.scaffold_8.66
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|22299394|ref|NP_682641.1| | 0 | preprotein translocase subunit SecA [Thermosynechococcus elongatus BP-1] |
| nr | gi|743769011|ref|XP_010914785.1| | 0 | PREDICTED: protein translocase subunit SECA1, chloroplastic [Elaeis guineensis] |
| Swissprot | tr|Q9SYI0|SECA1_ARATH | 0 | Protein translocase subunit SECA1, chloroplastic (Precursor) |
| trEMBL | tr|V4TC12|V4TC12_9ROSI | 0 | Protein translocase subunit SecA {ECO:0000256|RuleBase:RU003874} |
| TAIR | AT4G01800 | 0 | Albino or Glassy Yellow 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000004 | 3838087 | 3900200 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017023
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07517.13 | SecA_DEAD | 75 | 441 | 8.10E-115 |
| PF01043.19 | SecA_PP_bind | 291 | 397 | 2.00E-33 |
| PF07516.12 | SecA_SW | 746 | 961 | 3.50E-51 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03070 | secA | Protein export | map03060 |
| Bacterial secretion system | map03070 | ||
| Quorum sensing | map02024 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006605 | Biological Process | protein targeting |
| GO:0017038 | Biological Process | protein import |
| GO:0006886 | Biological Process | intracellular protein transport |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 15.710 |
| SRR2545915 | Juvenile tuber | 19.890 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.070 |
| SRR5643514 | five period of Gastrodia elata | 12.940 | |
| SRR5643515 | five period of Gastrodia elata | 12.790 | |
| SRR5643524 | five period of Gastrodia elata | 12.470 | |
| SRR5643525 | five period of Gastrodia elata | 13.020 | |
| SRR5643528 | five period of Gastrodia elata | 8.940 | |
| SRR5643658 | five period of Gastrodia elata | 12.110 | |
| SRR5643659 | five period of Gastrodia elata | 13.510 | |
| SRR5643660 | five period of Gastrodia elata | 12.510 | |
| SRR5643661 | five period of Gastrodia elata | 13.540 | |
| SRR5643662 | five period of Gastrodia elata | 9.990 | |
| SRR5643663 | five period of Gastrodia elata | 14.770 | |
| SRR5643664 | five period of Gastrodia elata | 12.340 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.660 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.560 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.980 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.710 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.160 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 16.740 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 14.120 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.080 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.880 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.590 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.380 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.380 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 16.25 |
| Juven | Juvenile tuber | 21.61 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.57 | |
| Mother_Juven | Mother tuber of Juvenile | 19.77 |