Gene detail

Detail information of GWHGAAEX017024/evm.TU.scaffold_8.69

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|521464512\|ref\|YP_008151634.1\|	2.00E-22	hypothetical protein SCE1572_26190 [Sorangium cellulosum So0157-2]
KOG	KOG1187	0	Serine/threonine protein kinase
nr	gi\|672133351\|ref\|XP_008790290.1\|	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Phoenix dactylifera]
Swissprot	tr\|P93050\|RKF3_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase RKF3 (Precursor)
trEMBL	tr\|B9I9Z6\|B9I9Z6_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:EEE98697.2}
TAIR	AT2G48010	0	receptor-like kinase in in flowers 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000004	3994560	3996984	-

Transcript Sequence
>GWHTAAEX017024 GTGGACTCAACGAAACTTCAAAGCGTCCACTTTTTCCGGCTCTCCTCGTCTCTCTTTTAAGTTACAATCTCGCTCCACCATTACCCAAAAGGAGATGAAGCTGTTCCACATCTTTCTCCTCTTCATTTCTCTCCCGCAGTTCGTCTTCTCTCAGGAGAACCTCACCACTACCCCTTGCCCTCTCGACTTCTCCATCGCTAAACCCTACGTCTCCGCCGCTTCCTCCTCCCCTCCCTCCGACCTCTGCGGCTTCTCCCTCCTGCTCCTTCACTTCGTGGAATCCCAGTACCTCCTAGCTTCCAACCTCTTCGTCCCCCCTGTCTCCTCCTCCTCTTCGTGCTGGTCCGATCTCTCATCCCTCCTCTCCCCCTTATCACTTTCCCTCCCTTCCTCCTGCAACTTCTCTACCCCCTCTATCTCTCTCACCTGCATGAACCTCTCATCCCGCTCCGACTTTGGCTCCTTCCTCCCTTCCCAAGCCCTCGCAGACCTCAACTCCTCCTGCGACCGGCCGCTGTCATCTTCCTCCTTCTGCACTTCCTGCACCACCACAATCAACCGCATCAAGGTCTCTTATCTCGTCGGACCCGAAGTCTCAAATGTCACTGATTGTACCGATTACCCCTTCATCTATGCCGCTGCTGTGGCCAATCGCTTCGGCCCTACTGATCCCTCCACTGCTTCTTGCCTCTTTCTCCTTCAGATTCCATCATCATCATCATACTCTTCCCGCGGTGTTGTCGCTCTTCCGGCTGCAATCGCCGCAGCCGCGGCTGCCCTAATTGCTGGTGCAGCATTCGTCGCGTGGTATTTGATTCGCTGGCGGCGGCGTCGGCGTCGGAAAAGCTGGAGCAGTGCACTTGCGAGATCCGATGCAGTGGTCGGCACCAGCACGTCCCTGATCAGGTACAGCATCGAGGAGGTTCGGGAGGCTACAGGGAATTTCTCTAGAGATAATATAATTGGAAGCGGAGGATACGGGAATGTATACAAAGGCATTCTCAAGGATGGGAGTTTGGTTGCTGTCAAGCGCTTCAAGAACTGCTCTGCTGCCGGCGACGCTAGCTTCGTGCACGAAGTAGAGGTTATTGCGAGCATTCGTCACGTGAACCTTGTGGGTCTCAAAGGGTATTGCACAGCGACAACATCTATGGAGGGACATCAGAGAATAATTGTCTGTGATTTGATTGCCAATGGAAATCTTCATGATCACCTTCTTGGCTTCGGAGCAGGGAGACTGAGCTGGCCTGTGAGGCAGAGAATTGCTGTGGGCACGGCTAGGGGGCTGGCTTATTTGCATTGTGGCGCACAGCCTGCCATTATTCATAGGGATATAAAAGCGAGTAATATTTTAGTTGATGAGAAATTTGAGGCCAAGGTAGCAGATTTCGGTCTTGCTAAGTTTGCACCTGAAGGCACGTCTCATGTGAGTACTAGGGTCGCTGGGACTTTGGGGTATGTTGCTCCTGAGTATGCTCTTTTTGGGCAGTTAACTGAAAAGAGTGATGTTTTTAGCTATGGAGTTGTGATGCTTGAGCTTTTGAGTGGAAAGAAGGCCTTCAGAACAAGTGAAGATGGGCAGAATTGGCTTGTGACTGATTGGGCTTGGTCCCTGGTTAGGCAAGGGAAGACAATGGATGTAATTGAGGAAGGTATGAAGGACTTGGGGTCAAATGAGGTACTGGAAAGGTATGTGCTAGTTGCAGTTCTGTGCTCGCATCCCCAGATGCATGCTCGGCCAACAATGGATCAGGTTGTAAAGATTCTGGAGAGTGATTTGGCTGTTCCGTCCATTCCAGATCGCCCTATTTCTATCATCGCTAATAAGGAGGATATTGAGAGATCAATGAGCAGCAGCAGCTCAGGTCAATTGTTCTCTCCTTCTGGATATAGCCCTTATATTTTGACAAGGGATGACACTCCTCGCCTAGGTTCCAAGGCTTTATGATTCTTGCTTACAAAGTATTAAAACCTTATCCAGGACACCAGTCTGTCAGCAGTTGAGGATCTATGGTAATTTGCTTTTTTTCTAGATTTAATACTTTTGTTTTGAAATATACAAAAGCACTTTCATACTGTGATTATATTTTATTGAAATTTTTATGGTTGACTAGGGGAAGGCTACTAGTAATAAGGTTTTCTTTTGGTTCAAACAGTGCACATATTTTGTTCAGTTTGTAAGGATATTTCTGAACAGTATGAGCTTGTAACTGTGGCACTGAATTCGTTGATTATATTAATGGTTTGGAGTGAAATTCTTTTTATGTAAATAAGTGTTGAGAATTTTCTTATATTTACTTATTAAAATCCTTTTGTTCTAGCGGTTTTTGATTAATAAAAATTCCCATTTTTCTTAGATGCTTTCAATAACCTAGTATTATTTTTTGGGAAATGCATGCATTATATCACTCAGAGGGGGAAGGCT

Network for GWHGAAEX017024

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	285	556	1.00E-43

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RKF3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.670
SRP064423	SRR2545915	Juvenile tuber	5.310
SRP108465	SRR5643513	five period of Gastrodia elata	5.660
	SRR5643514	five period of Gastrodia elata	4.200
	SRR5643515	five period of Gastrodia elata	7.650
	SRR5643524	five period of Gastrodia elata	4.410
	SRR5643525	five period of Gastrodia elata	15.620
	SRR5643528	five period of Gastrodia elata	45.090
	SRR5643658	five period of Gastrodia elata	12.130
	SRR5643659	five period of Gastrodia elata	8.390
	SRR5643660	five period of Gastrodia elata	6.430
	SRR5643661	five period of Gastrodia elata	6.930
	SRR5643662	five period of Gastrodia elata	9.740
	SRR5643663	five period of Gastrodia elata	7.330
	SRR5643664	five period of Gastrodia elata	11.250
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.050
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.760
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.800
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.420
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.420
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	8.230
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.060
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.330
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.260
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.290
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.660
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.660
SRP279888	Gastro	Gastrodia elata tuber	5.28
	Juven	Juvenile tuber	5.11
	Mother_Gastro	Mother tuber of Gastrodia elata	30.01
	Mother_Juven	Mother tuber of Juvenile	34.14