Gene detail

Detail information of GWHGAAEX017025/evm.TU.scaffold_8.70

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743856079\|ref\|XP_010941757.1\|	0	PREDICTED: uncharacterized protein LOC105059934 [Elaeis guineensis]
trEMBL	tr\|B9S3Y9\|B9S3Y9_RICCO	0	Putative uncharacterized protein {ECO:0000313\|EMBL:EEF41670.1}
TAIR	AT4G03090	5.00E-128	sequence-specific DNA binding;sequence-specific DNA binding transcription factors

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000004	4056048	4089755	-

Transcript Sequence
>GWHTAAEX017025 CACATATATGGGTTAAGCACGTAAGCGACCCAGCATCTTTTTAACTTATCGTACTTTTTTTTAACTTACCCGTCAGCTGCCATCATCTTGTGATTTTTCCTTTCCCCACCATTCCCACAAACGACGGAAGTTTCTCGACCCCGACTCCTGTTCGAAGCACCTCGTCGATCGACGCCAACGGTCGTTGACTTTGTCAGCGCCGGCCAGCTGACTACCGCCGCTAGCCACCCTCCTTCTCCATCTATAATAATCCACTTCCCCTGTCAGTTTCGAGATACACCAAAAACCCTCAAATCGTTTTTCTTCTCTGCTGCGATTCCCCTCACTGAGAGTCACCTCTACTTGACCTTCTCCTCGGACGGAACTATCCCTGCTGAGGATCTGAGCTCCACCGATCTGGATCCTCGCTGCCAACTCGGCTAAGAAAGATCGAAGGAATCTAGATTTGTGTCGTCGTTTACTACATTCGTTACTCTAACAGCAGCATTTCGACTGGCTATATTTTCTCATCATCTGTGATTGAGATGAAGAGAAGATAATAGATATCACTTTAGAGAGGAGTGTTGTCGCTGTTCTTTTTCAACCCTTTCTTCCTCTGTAAGGCCGGGATCTTCAGATGGTTGACCTGAACTCAATTATTGAAGAGTTGAGTGGGATTTCCTCTAAAGAAATTATTAAGCTGCTGAAAGAAACTGACACTTTCACTATACAGTTCAATGATTCAAGTGGCTGCTCTAGACAAATTGATATAGAGGGTCTGGCTTCTTCTCTACCTTTACACGTAATAGCGGTGCTCTTGTCAAGTTGCTATGGTGAGAATTTCTTGCCTTTGCTTCATGGTGTACGTCTTCTGTGTACCTTTTCAGACCTTGCAACTCGTCATTCTAGACTGGAGCAGATTCTTCTAGACGATGTTAAACTATCTGAACAAGTGATGGATTTGGTGATTTTCATGTTGATTGTTCTTGCTCAATGTGATCAAGGCAACCATGTTGGAAGATCTGTACCTGTTATACATGCTGCACTTGTTACTTGCAGTTTCCATCTATTAACAGGTTATATCTCATCACAGTGGCACGATATTGCTAATGTTATGCTTGCTCATCCTAAGGCTGATATATTTATGGACGTTGCATTTGATTCTGTACACGCAACTTTTAGGCTCTTGAATGTGAAGCTTTCTTTGCTAAACCATAATGTCTTAGGCAACTCTTTAAGTCTTTCTATTGCTGAAAAGATTGCTAGTTTTATCTTCCAGCAATGTGAGGCTTCATTGCAATATATTCTTTCCCTGTGCCAGCAAAAAGTGTTCCGAGATCGTCTGCTTAAATATAAGGGGCTGTGCAAAAATGGGGGTATTCTCTCTCTTACTTGTACAATTCTTAGATTAAATATTCCAGATTGTTTTAAGGAGTCTCTTGTTGTTGTATCTGCTATCTCTAGATGTAAATCTAGAGTACTATCCATTTTACTGCAGCTCTGCGAAGCAGAAAACTTTTCTTATCTTGATGAGGTTGCTGGTAGCCAAAAGAGCTTACATCTGGCAAAATCGATAACTAAACAAATACTTGAAATTCTGAAAACTGGGTTCAAGAGAGAATCCATACAAATTGGTGATTCTGTTGGCAGGAGATATCCAAAGGGTCTCTTACTACTTAATTCACTGCGTTTAGCTGATATCTTTTCTGATGATTCCAACTTTAGATCTTTTTTTATGACAAATGCTATTCATGTTCTAAATGAAATTTTGGCAGTTCCTCATGAAATCTTTCTCTCAAGCTGGTGTACTGTTGATGGCTATGTTTTTGAAGAAGATGGTAATCTAGAGTATGACCCATTTATTGCTGCTAGTTTGGCATTGATTATTCAGAATGGTTGTACTGAAAATATTCTATCTTCTGCTTTTCTATCAAACGAAATTAACTTTTCATTCCATAGTAATTTCAATGGTATACACTTAGTTTCATATGGACAGCAGAGAACATCTTACTTGATCAAAATTTTAGCAAATCTTCACTGTTTTGTGCCTAGTTTCTGTGAAGAAGAAGAACGGAATTTGTTTCTCAAAAAGTTTCACGAGTGCTTAATCATGGAGACCAGTGATTCATTCTCAAAGCTTCCGGTTGATGTTAATACCCATAAAGCTTCCACAATTTGTGAAAACCTAAGCTCCTTGTCAAATTATGCAGTATCTTTGATTCCCAACATGTTGAATGATGAAGATGTTCAACTGTTGAGGGTTTTCACTGAACAACTAAAGAAACTTGCCTTATCAAATGGCGATAACCATGCTCAGGCATCAATAAATATTGAAGGTGCAAATGTTAAAGTTGAAGATAGCAATCCTATGCTGCAATCTTTGCCAACTTGGACAAAGTTTGGTAATGGAAATTTAAATAGAACTCACCAGGATGCTCAGAACGGAGGAGGCAGGTCTTATTTGTTTTCCAAAGCTGAATCCAAGCTCCAAGATGATTTTATAGACACAAAAAGTAGTAATGTAGATATAAAAGGAGGGACACCACACAGCTCATCAAGTTTGGAGTTCGACCCTCTCTCAGAGTTTGCAAAAGAAGCTGGTTTCCAAGAAGAAGATAAAGCCGAAGGCATTCAAAATGAGGAGAAACAGCCAAGAAAGAGAAAGCGCAATATCATGAATGAAAGGCAGATATCCCTGATTGAGAATGCACTCCTCGGAGAGCCTGAGATGCAGCGGAATGCAGCCATGTTGCAGGCATGGGCTGAAAAGCTCTGTTCCCAGGGATCAGAGATTACTGCTTCTCAGCTAAAGAACTGGCTAAACAACCGGAAGGCGAGGCTTGCCCGAGCAGCCCGAGAAGCAAGAGCCCCTTCAGAAGGGGAAAATGCGTATGATAGTGGGGGGGAAGAGCCTCACATTCCTGGGATCATTCGAGGAAATGGGCATCAGTCTGACACCCACGTCGAGGCCTGTTCATCCGGGCCTGTGTCCAGTTTTGTTATTGTGGGACTCTCGAGAGAAGCAGGATATGCAGCAGAGGGTACCCCAGTTGAAAGGGAAGTGACAAGAGAAGAGTCCTCTGATGGGCTCATCAAACAGGGGCGTTGCTGAGGGTTTCCAAACTTTTGATGATATGATGCTTCTGGGTCATCGCACTGTGCTTCATTCTTGTTTAATGTTCTTAGTATTTTGTTAAAGGTTTTTTCATACTTTATATGCGTTCCAAATTGTTAAAATGCTAGTGAATATGATGTTGTCCAGCAAATACAGCTGAATGTAGATTCTTTTTTCTTTTTTTTTATTAAATTTATGTGTTATGTATGTAAATATCTATTGTTGTCGTATACTTGTTTGAATTGCCCGTTTCATGTTTATTAATATCAATTTAAATGTCTAGGTTTGGTTGGATG

Network for GWHGAAEX017025

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.810
SRP064423	SRR2545915	Juvenile tuber	19.980
SRP108465	SRR5643513	five period of Gastrodia elata	15.070
	SRR5643514	five period of Gastrodia elata	17.140
	SRR5643515	five period of Gastrodia elata	14.930
	SRR5643524	five period of Gastrodia elata	16.210
	SRR5643525	five period of Gastrodia elata	23.030
	SRR5643528	five period of Gastrodia elata	21.740
	SRR5643658	five period of Gastrodia elata	24.850
	SRR5643659	five period of Gastrodia elata	17.580
	SRR5643660	five period of Gastrodia elata	18.880
	SRR5643661	five period of Gastrodia elata	17.990
	SRR5643662	five period of Gastrodia elata	18.750
	SRR5643663	five period of Gastrodia elata	19.930
	SRR5643664	five period of Gastrodia elata	20.900
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	16.510
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.010
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	18.570
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	21.420
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	20.470
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	21.040
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	20.530
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	22.160
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	16.400
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	16.430
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.230
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.230
SRP279888	Gastro	Gastrodia elata tuber	23.83
	Juven	Juvenile tuber	21.42
	Mother_Gastro	Mother tuber of Gastrodia elata	33.57
	Mother_Juven	Mother tuber of Juvenile	31.75