Detail information of GWHGAAEX017026/evm.TU.scaffold_8.72


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG44301.00E-46Topoisomerase I-binding arginine-serine-rich protein
nrgi|672134675|ref|XP_008790986.1|1.99E-86PREDICTED: uncharacterized protein LOC103708012 [Phoenix dactylifera]
trEMBLtr|F6HYY8|F6HYY8_VITVI7.00E-82Putative uncharacterized protein {ECO:0000313|EMBL:CCB59902.1}
TAIRAT3G052501.00E-46RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000441471464198664-
Transcript Sequence

Network for GWHGAAEX017026

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module8

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00097.24zf-C3HC411594.50E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046872Molecular Functionmetal ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms255.310
SRR2545915Juvenile tuber175.390
SRP108465SRR5643513five period of Gastrodia elata70.060
SRR5643514five period of Gastrodia elata76.070
SRR5643515five period of Gastrodia elata62.300
SRR5643524five period of Gastrodia elata73.170
SRR5643525five period of Gastrodia elata104.890
SRR5643528five period of Gastrodia elata109.080
SRR5643658five period of Gastrodia elata117.090
SRR5643659five period of Gastrodia elata34.090
SRR5643660five period of Gastrodia elata28.310
SRR5643661five period of Gastrodia elata28.610
SRR5643662five period of Gastrodia elata25.950
SRR5643663five period of Gastrodia elata31.650
SRR5643664five period of Gastrodia elata28.700
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_174.170
SRR6049655Rhizomagastrodiae_C368-T10_good_177.760
SRR6049656Rhizomagastrodiae_C368-T07_good_174.720
SRR6049657Rhizomagastrodiae_C368-T07_good_193.790
SRR6049658Rhizomagastrodiae_C368-T04_good_1111.390
SRR6049659Rhizomagastrodiae_C368-T04_good_1112.790
SRR6049660Rhizomagastrodiae_C368-T01_good_188.530
SRR6049661Rhizomagastrodiae_C368-T04_good_187.350
SRR6049662Rhizomagastrodiae_C368-T01_good_167.230
SRR6049663Rhizomagastrodiae_C368-T01_good_179.670
SRR6049664Rhizomagastrodiae_C368-T10_good_178.480
SRR6049665Rhizomagastrodiae_C368-T10_good_178.480
SRP279888GastroGastrodia elata tuber 51.09
JuvenJuvenile tuber51.71
Mother_GastroMother tuber of Gastrodia elata 61.93
Mother_JuvenMother tuber of Juvenile 56.24