Detail information of GWHGAAEX017027/evm.TU.scaffold_8.73
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|46447549|ref|YP_008914.1| | 3.00E-28 | hypothetical protein pc1915 [Candidatus Protochlamydia amoebophila UWE25] |
| KOG | KOG1947 | 6.00E-120 | Leucine rich repeat proteins, some proteins contain F-box |
| nr | gi|672183454|ref|XP_008812005.1| | 0 | PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|Q9C5D2|FBL4_ARATH | 0 | F-box/LRR-repeat protein 4 |
| trEMBL | tr|M0SH04|M0SH04_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P22880_001} |
| TAIR | AT4G15470_2 | 6.00E-120 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000004 | 4225124 | 4306790 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017027
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13516.5 | LRR_6 | 166 | 188 | 0.0016 |
| PF13516.5 | LRR_6 | 191 | 214 | 0.024 |
| PF13516.5 | LRR_6 | 450 | 472 | 0.26 |
| PF13516.5 | LRR_6 | 477 | 498 | 0.01 |
| PF13516.5 | LRR_6 | 527 | 549 | 0.14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 21.260 |
| SRR2545915 | Juvenile tuber | 24.610 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 23.640 |
| SRR5643514 | five period of Gastrodia elata | 25.700 | |
| SRR5643515 | five period of Gastrodia elata | 22.200 | |
| SRR5643524 | five period of Gastrodia elata | 24.860 | |
| SRR5643525 | five period of Gastrodia elata | 19.520 | |
| SRR5643528 | five period of Gastrodia elata | 14.510 | |
| SRR5643658 | five period of Gastrodia elata | 18.400 | |
| SRR5643659 | five period of Gastrodia elata | 26.520 | |
| SRR5643660 | five period of Gastrodia elata | 28.290 | |
| SRR5643661 | five period of Gastrodia elata | 26.230 | |
| SRR5643662 | five period of Gastrodia elata | 25.040 | |
| SRR5643663 | five period of Gastrodia elata | 29.940 | |
| SRR5643664 | five period of Gastrodia elata | 28.290 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 23.740 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 25.400 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.290 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 28.490 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 28.310 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 33.040 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 24.210 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 23.490 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 17.170 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 20.780 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 20.440 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 20.440 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 24.17 |
| Juven | Juvenile tuber | 29.71 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 24.38 | |
| Mother_Juven | Mother tuber of Juvenile | 29.79 |