Gene detail

Detail information of GWHGAAEX017034/evm.TU.scaffold_8.84

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2190	2.00E-90	PolyC-binding proteins alphaCP-1 and related KH domain proteins
nr	gi\|672156278\|ref\|XP_008797831.1\|	0	PREDICTED: KH domain-containing protein At4g18375-like [Phoenix dactylifera]
Swissprot	tr\|P58223\|Y4837_ARATH	4.00E-57	KH domain-containing protein At4g18375
trEMBL	tr\|M0SGG9\|M0SGG9_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P21030_001}
TAIR	AT5G15270	2.00E-90	RNA-binding KH domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000004	4564097	4592173	+

Transcript Sequence
>GWHTAAEX017034 ATGGATGATGAAAGGCATTTGCCTTATGGGAATTACAAGTCAGACAGTTCTAAAAAACGAGCTAACTCTGAATTGGATAATGGGAGGTATAAACGGCGCAACACTGATGATGGCGTTAGTGCCAAGACCATTGATACTCTATATCGCATACTCTGCCCTGTCAAGAAAATTGGCAGTGTTCTCGGGAGAGGAGGTGATATAGTTAATGCTTTGAGAGATGAGACTCATGCAAAGATACGGGTTGTTGATGCCATTCCTGGTGCTGATGAGAGAGTAATTATTATATTTAGTTATCCTCATCAAGAAGAAGAAAGGTATAATAAGACTCAGAATACAATAAATGATAATCTTTCTGGAGGTGATAATCAGGATATGAAGCCACATTGTCCAGCCCAGGAGGCTCTTCTGAAAATTCATGAGAGAATTGCTGCAGATGAGTATATGCGCGGAGGAGTGTTGCACGAAAACACTGAACCTCAGGGTGATGTGAGTGCCTGCATTCTTGTTCCTAGCAATCAAGTTGGCTGCCTTCTTGGGAAGGGTGGAATTATTGTTCAGAAATTGAGACAGGATACTAGGGCAAACATTCGAATTTTACGGTCAGACCTTCCACCTTGTGCCATGAGATCTGATGAACTAATTGAGATATCTGGCAAGCCAGTCATTGTAAAAAAGGCGCTCTATGAGATTTCCACTCTATTGCACCATCATCCACGAAAGGAAAACCCTCCTTTGGAAGATATCTTATCTGCAAGTACCCAAAGCCTCTACCGGCCAGGTCCTAAAATACCTTCTCCTTTGCCTCATGGAAATCCGATGCTGTCTCGCTATACGCCACCACCATCATGGTTTGATGGATATCGAACTAAATCATATAATCATGGTCTAGGCAGTTTTGACTCTGGTGCTGTCAGAAATGGAGAGTTGGAGGATTTTTACATTAAAATTTTGTGTCCTACAGAGAAGATTGGTGGCATAATTGGGAAAAGTGGTGCAAATGTTAGACATTTAGAGAGGCAAACAGGGGCTAGTATTCATGTCAAGGACACTGATCCTGATGATAGGGAACGTGTGATTGTTGTTTCCTCAAAGGAGGCTCTGTCAAATCCGATTTCTCCAACCATTGAAGCCATTCTTCAACTTCAGAGTAGAGCTAGTAATGTGTCTGTAAAAGGTGAAATCACAACAAGGCTACTTATCTCCTCTAGTAAGATTGGTTGTCTACTAGGGAAAGGTGGAGAAGTAATTAAAGATATGAGGCACCGTACCCGTGCAGATATACGTGTTTATTCAAAATCTGAGATACTACCAAAATATGCATCTAATGATGAAGAGCTAGTTCAGATATCTGGAAGCGAAATTGTAGCAGAGACTGCTCTCTCAGAGATTGCTTCCAGGCTCAGAGCAAGGTTCTTTCAAAAAGAGGGTACCTCTGTTGATTCTTTGATTACTGAGCGAGGAGATGGATTTGCTCATTCAGAAAGTTTTTCTAGAAGAGCCCGACAACCATCTTCTGCCATTGGCCCTGGAAATCCAGCTTTAAATGACTACCCATTAAGTTATGAATATCCTGAAGACTCACATTACTCAAAAGGTTATGGTCACCCAAGGAGTTATGAGTATCCAAAGAGCTATGATTACCCAAAAGATTTTGGCTACCCAAAGGATTATGATTACACGAAGATGTATGACTATCCAAAAGATTATGATTATCCAAGGGGTTCTGATTTCACAAAGAGTTATGAATACTCCAAGGATGCCAGTCAACATTTTAACCCTCATGGTTATCCTGGTCCGCTACATCCTACTGTGTACTCTGACATGAGGAGCTCTGTGGAAATCAAGACTCCGAGGAGCTCAGTTTTGGGAATAATGAGTGGAAGAAATGTTTCTGATGTTCATCAGGTGTTGCCGCCAGGTGCATCTTGGAGATACAAGGATAATCCGAGCCGGTAG

Network for GWHGAAEX017034

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00013.28	KH_1	48	97	3.90E-10
PF00013.28	KH_1	167	231	3.20E-12
PF00013.28	KH_1	314	365	4.80E-12
PF00013.28	KH_1	395	463	1.30E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003723	Molecular Function	RNA binding
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	198.980
SRP064423	SRR2545915	Juvenile tuber	234.360
SRP108465	SRR5643513	five period of Gastrodia elata	100.240
	SRR5643514	five period of Gastrodia elata	96.680
	SRR5643515	five period of Gastrodia elata	90.650
	SRR5643524	five period of Gastrodia elata	93.920
	SRR5643525	five period of Gastrodia elata	70.560
	SRR5643528	five period of Gastrodia elata	82.280
	SRR5643658	five period of Gastrodia elata	77.050
	SRR5643659	five period of Gastrodia elata	121.500
	SRR5643660	five period of Gastrodia elata	119.920
	SRR5643661	five period of Gastrodia elata	121.950
	SRR5643662	five period of Gastrodia elata	145.480
	SRR5643663	five period of Gastrodia elata	142.650
	SRR5643664	five period of Gastrodia elata	150.320
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	155.840
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	120.830
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	140.020
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	179.110
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	188.820
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	218.650
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	159.680
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	178.200
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	125.390
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	143.270
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	113.680
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	113.680
SRP279888	Gastro	Gastrodia elata tuber	118.69
	Juven	Juvenile tuber	160.98
	Mother_Gastro	Mother tuber of Gastrodia elata	124.01
	Mother_Juven	Mother tuber of Juvenile	209.87