Detail information of GWHGAAEX017042/evm.TU.scaffold_8.92


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|427735203|ref|YP_007054747.1|3.00E-19WD40 repeat-containing protein [Rivularia sp. PCC 7116]
KOGKOG14460Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2
nrgi|672135030|ref|XP_008791174.1|0PREDICTED: WD repeat-containing protein 82-B [Phoenix dactylifera]
Swissprottr|Q3Y8L7|DAW1_CHLRE9.00E-12Dynein assembly factor with WDR repeat domains 1
trEMBLtr|A0A061EC27|A0A061EC27_THECC0Transducin/WD40 repeat-like superfamily protein {ECO:0000313|EMBL:EOY02486.1}
TAIRAT5G145300Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000448337824859775+
Transcript Sequence

Network for GWHGAAEX017042

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.31WD4024520.0058
PF00400.31WD401051422.70E-07
PF00400.31WD402522720.015
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
K14962WDR82, SWD2, CPS35 mRNA surveillance pathway map03015

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms23.580
SRR2545915Juvenile tuber19.330
SRP108465SRR5643513five period of Gastrodia elata13.780
SRR5643514five period of Gastrodia elata14.330
SRR5643515five period of Gastrodia elata15.260
SRR5643524five period of Gastrodia elata17.160
SRR5643525five period of Gastrodia elata21.850
SRR5643528five period of Gastrodia elata17.040
SRR5643658five period of Gastrodia elata15.520
SRR5643659five period of Gastrodia elata16.420
SRR5643660five period of Gastrodia elata19.940
SRR5643661five period of Gastrodia elata17.750
SRR5643662five period of Gastrodia elata19.280
SRR5643663five period of Gastrodia elata16.910
SRR5643664five period of Gastrodia elata21.350
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_113.060
SRR6049655Rhizomagastrodiae_C368-T10_good_120.780
SRR6049656Rhizomagastrodiae_C368-T07_good_111.690
SRR6049657Rhizomagastrodiae_C368-T07_good_116.300
SRR6049658Rhizomagastrodiae_C368-T04_good_116.390
SRR6049659Rhizomagastrodiae_C368-T04_good_117.280
SRR6049660Rhizomagastrodiae_C368-T01_good_111.400
SRR6049661Rhizomagastrodiae_C368-T04_good_114.370
SRR6049662Rhizomagastrodiae_C368-T01_good_112.140
SRR6049663Rhizomagastrodiae_C368-T01_good_112.900
SRR6049664Rhizomagastrodiae_C368-T10_good_112.540
SRR6049665Rhizomagastrodiae_C368-T10_good_112.540
SRP279888GastroGastrodia elata tuber 27.50
JuvenJuvenile tuber34.73
Mother_GastroMother tuber of Gastrodia elata 29.01
Mother_JuvenMother tuber of Juvenile 40.44