Detail information of GWHGAAEX017049/evm.TU.scaffold_8.101_evm.TU.scaffold_8.103
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|16330366|ref|NP_441094.1| | 3.00E-66 | tocopherol phytyltransferase [Synechocystis sp. PCC 6803] |
| nr | gi|590001296|gb|AHL26475.1| | 0 | homogentisate phytyltransferase [Elaeis oleifera] |
| Swissprot | tr|B7FA90|HPT1_ORYSJ | 1.00E-167 | Probable homogentisate phytyltransferase 1, chloroplastic (Precursor) |
| trEMBL | tr|W8NZU5|W8NZU5_ELAOL | 0 | Homogentisate phytyltransferase {ECO:0000313|EMBL:AHL26475.1} |
| TAIR | AT2G18950 | 4.00E-43 | homogentisate phytyltransferase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000004 | 5036820 | 5102868 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017049
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01040.17 | UbiA | 142 | 387 | 2.20E-41 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K09833 | HPT, HGGT, ubiA | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Ubiquinone and other terpenoid-quinone biosynthesis | map00130 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016765 | Molecular Function | transferase activity, transferring alkyl or aryl (other than methyl) groups |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 15.470 |
| SRR2545915 | Juvenile tuber | 11.040 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.670 |
| SRR5643514 | five period of Gastrodia elata | 8.770 | |
| SRR5643515 | five period of Gastrodia elata | 6.670 | |
| SRR5643524 | five period of Gastrodia elata | 9.790 | |
| SRR5643525 | five period of Gastrodia elata | 7.690 | |
| SRR5643528 | five period of Gastrodia elata | 7.130 | |
| SRR5643658 | five period of Gastrodia elata | 10.090 | |
| SRR5643659 | five period of Gastrodia elata | 3.000 | |
| SRR5643660 | five period of Gastrodia elata | 2.400 | |
| SRR5643661 | five period of Gastrodia elata | 2.680 | |
| SRR5643662 | five period of Gastrodia elata | 3.020 | |
| SRR5643663 | five period of Gastrodia elata | 1.990 | |
| SRR5643664 | five period of Gastrodia elata | 2.080 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.300 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.840 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.090 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.000 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 14.300 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 12.060 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.690 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.670 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.940 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.810 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.890 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.890 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.12 |
| Juven | Juvenile tuber | 7.22 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.68 | |
| Mother_Juven | Mother tuber of Juvenile | 8.61 |