Gene detail

Detail information of GWHGAAEX017050/evm.TU.scaffold_8.104

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|32471474\|ref\|NP_864467.1\|	1.00E-23	serine/threonine-protein kinase pknA [Rhodopirellula baltica SH 1]
KOG	KOG1187	0	Serine/threonine protein kinase
nr	gi\|672134890\|ref\|XP_008791099.1\|	0	PREDICTED: serine/threonine-protein kinase PBS1-like [Phoenix dactylifera]
Swissprot	tr\|Q9FE20\|PBS1_ARATH	0	Serine/threonine-protein kinase PBS1
trEMBL	tr\|A0A061E5W6\|A0A061E5W6_THECC	0	Kinase superfamily protein {ECO:0000313\|EMBL:EOX99706.1}
TAIR	AT5G13160	0	Protein kinase superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000004	5114248	5121966	+

Transcript Sequence
>GWHTAAEX017050 TAGTGATGTTATTTTGAGCCATATATGTTAGCGGGTGACTCTCTTCTTGATCTTAGCTAGATACTCCTCAAATTTCAATTGGATTGATGCTCCCACAAGTCACGGGCTCAGCATTGGCCTTAAAGGGAAGAATCGAATTCTAATCTCATTTTTATTTCATTATCTTCCCTTTGTTTAGTTTGAGTTTCCTTACTATGTTTACGTTAGTCTTATATATTCGAACTTTTTTTTTTATTTATTTAATATGCAGGCTTTCAACAGTTAAAAAAAAATACAAAAATCGAATTTTTATTCCAATTATTAAATTGCCTCTCTCTTGTGATCAGCGTACAGGTGTACCTCATTAAAATCATCTTCTTTGTTTTTAGGGCAGAAATAGTGCAATCTGCAATGGCGTAACGCATTAATATTTTAGTGGGAAATTGCCCCACCTGTCCCCATAATTGATATGGGATTCACATGCAGCTGTAACTAATAGCCACAAGCATTTCAACGAGCACATTCGGCTGCTAGATTTATCCTCTTGAGCAACAGTCAGTAGAGCAGCAGCCTGTAAAGTAGGCTAATATCGTGATTTCAGCGTGCAAAAGATCTTCAAAATGTCCCAATTTTCTGGATACTAAGCGAGGCCACGGTGATATAATTTTCAAATTACCTTTTTTTTGGAATGTATATTAACGGAAGCGTCCAATACCTAAGAATTAGGCAAGAGGCCGGCAAAGTCTTTCACTATTCACATCAGCAGTAAAGGCAGGATTCGGCAGTAGAGCTCTTTTACCCCCTTGAAATTCTTTCAAAGATTCCGTCTTCTTAGCTCTACAATCCTTTGAATCTGTTCGGTCTTATCTGAAACAGGAGATGGGCTGTTTCCCGTGCTTCGGTTCGGAGGAGGTTTCGAATTATCATCCTCGAGATGAGGAAGAAGCCAAGAAGGAAGAGCAGCCAATGGTAGCTCCCCGAGTAGTGAAAACGATAGTTCCTGGATCCGATAGGCTCAGAGCCCAAAGCAATTCAGGGTATAAAAGAGAGACATTAGCTCAGAAGGATGGGTCTGGTGTGACTATATCAGCACAGACATTCACATTTAGGGAGCTTGCTGCTGCAACAAAGAACTTTAGGCCTGAGTGTTTCTTGGGTGAAGGAGGGTTTGGCCGGGTGTATAAAGGTTGTTTGGAGAGCACTGGGCAGATTGTAGCTGTAAAGCAGCTGGACAAAGATGGATTACAAGGAAATAGAGAATTCCTTGTGGAGGTCCTCATGCTTAGTTTGTTGCACCATTCAAACCTTGTTAATTTAATTGGCTATTGTGCTGATGGTGACCAACGGCTTCTTGTATATGAGTTTATGTCTCTAGGGTCTCTAGAAGATCATTTGCATGATCTGCCACCTGACAAGACGCCTTTGGATTGGAATACGAGGATGAAAATTGCTGCGGGGGCAGCCAAAGGGTTAGAATACCTTCATGATAAAGCTAATCCTCCGGTCATCTATCGAGACTTCAAATCTTCAAACATATTGTTAGATGAGGGTTTCCATCCAAAACTTTCAGATTTTGGGCTTGCTAAGCTAGGTCCAGTTGGTGACAAATCTCATGTGTCAACTAGGGTTATGGGGACCTATGGATATTGTGCTCCAGAGTATGCTATGACCGGGCAGTTAACGGTTAAATCAGATGTCTATAGCTTTGGAGTTGTTTTCTTGGAGTTAATTACTGGAAGAAAAGCTATTGACAGTACCAGAGCGCATGGAGAACAAAATCTTATTCCATGGGCTCGGCCTCTGTTCAGCGATCGGCGGAAGCTCCCAAAGCTGGCTGATCCTAAGCTCCAAGGGCGGTACCCAATGCGCGGGCTCTACCAAGCCCTAGCTGTGGCCTCCATGTGCACGCAGGAGGAAGCGGCCGCCCGCCCTCTCATCGCCGACGTCGTGACCGCGCTCTCCTACCTGGCTTCCCAAACATACGAACCCAAAGACGCGCCCGCGCCCAGCCGGTGCTCGCGGGACGAGAAATCCGGCCGAGAAAATCACGATGGGTGCAAGTGGGACGCCTCCGTGCTCGAAAGAGACGAGTCTTCGGCAGACAATGCCTCCGGCGTTTCCAAGAGCGAATTCGATAGGGATAGGGCTGTGGCCGAGGCTATGCTGTGGGGAGCAAACTGGAGGGACAAGCAACTCGCAGCCAAGCACTGATTCTCTCTCTCTCTCTCCATTCATGAGGTTTTAAAATTCTCTTTCCGTGGCTTTTTAGTTCGTGAAAGATGGGAAGGTGGGTTTGGGATTTTTGTATATTTGCGACAACATGCAGTGAAAATTTTGTTACGAGGGAATGAATATAGAGAGTAATATTGTGTCTTTCGTTTGGCTCTTGAAATAAAAGTTCCATCTTTTAGAGGAGAGAAGAGAAGGTAAAGATAAGGGAGGATATGTTTAGTATTGATTGGTGCCTATGGAATGAATGTCCATCTCTATTATCTTTGTGAAAAAGTGGATTACACCTGCATGATGATTTTGTGTATAATTACTTACTTTTGAGCATGATGCCTAATTTGCTCGATTGAGGTGCCAAGATCATTTATATTTCCA

Network for GWHGAAEX017050

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	91	294	7.90E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-1

KEGG pathway

KO	Enzyme	pathway	mapID
K13430	PBS1	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.560
SRP064423	SRR2545915	Juvenile tuber	8.940
SRP108465	SRR5643513	five period of Gastrodia elata	8.360
	SRR5643514	five period of Gastrodia elata	10.410
	SRR5643515	five period of Gastrodia elata	8.520
	SRR5643524	five period of Gastrodia elata	9.990
	SRR5643525	five period of Gastrodia elata	8.960
	SRR5643528	five period of Gastrodia elata	8.160
	SRR5643658	five period of Gastrodia elata	12.240
	SRR5643659	five period of Gastrodia elata	11.670
	SRR5643660	five period of Gastrodia elata	11.490
	SRR5643661	five period of Gastrodia elata	12.420
	SRR5643662	five period of Gastrodia elata	10.770
	SRR5643663	five period of Gastrodia elata	11.550
	SRR5643664	five period of Gastrodia elata	9.810
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.340
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	10.840
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.000
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	10.450
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.990
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.870
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.920
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.220
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	13.140
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.080
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	13.070
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	13.070
SRP279888	Gastro	Gastrodia elata tuber	10.47
	Juven	Juvenile tuber	12.19
	Mother_Gastro	Mother tuber of Gastrodia elata	8.42
	Mother_Juven	Mother tuber of Juvenile	8.10