Detail information of GWHGAAEX017051/evm.TU.scaffold_8.106
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|291278588|ref|YP_003495423.1| | 2.00E-19 | ribonuclease III [Deferribacter desulfuricans SSM1] |
| KOG | KOG0701 | 0 | dsRNA-specific nuclease Dicer and related ribonucleases |
| nr | gi|719979204|ref|XP_010249397.1| | 0 | PREDICTED: endoribonuclease Dicer homolog 2 isoform X1 [Nelumbo nucifera] |
| Swissprot | tr|Q10HL3|DCL2A_ORYSJ | 0 | Endoribonuclease Dicer homolog 2a |
| trEMBL | tr|K4D5B2|K4D5B2_SOLLC | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc11g008520.1.1} |
| TAIR | AT3G03300 | 0 | dicer-like 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000004 | 5171947 | 5336672 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017051
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00270.28 | DEAD | 39 | 203 | 2.60E-13 |
| PF00271.30 | Helicase_C | 396 | 499 | 2.40E-16 |
| PF03368.13 | Dicer_dimer | 568 | 650 | 3.10E-16 |
| PF02170.21 | PAZ | 838 | 963 | 1.30E-12 |
| PF00636.25 | Ribonuclease_3 | 1005 | 1121 | 3.20E-23 |
| PF00636.25 | Ribonuclease_3 | 1196 | 1306 | 2.70E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006396 | Biological Process | RNA processing |
| GO:0004525 | Molecular Function | ribonuclease III activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0016891 | Molecular Function | endoribonuclease activity, producing 5'-phosphomonoesters |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.000 |
| SRR2545915 | Juvenile tuber | 2.960 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.110 |
| SRR5643514 | five period of Gastrodia elata | 2.800 | |
| SRR5643515 | five period of Gastrodia elata | 1.990 | |
| SRR5643524 | five period of Gastrodia elata | 2.090 | |
| SRR5643525 | five period of Gastrodia elata | 1.760 | |
| SRR5643528 | five period of Gastrodia elata | 1.350 | |
| SRR5643658 | five period of Gastrodia elata | 1.570 | |
| SRR5643659 | five period of Gastrodia elata | 1.570 | |
| SRR5643660 | five period of Gastrodia elata | 1.510 | |
| SRR5643661 | five period of Gastrodia elata | 1.850 | |
| SRR5643662 | five period of Gastrodia elata | 1.480 | |
| SRR5643663 | five period of Gastrodia elata | 1.250 | |
| SRR5643664 | five period of Gastrodia elata | 1.240 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.260 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.770 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.940 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.220 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.630 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.610 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.070 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.480 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.420 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.450 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.340 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.340 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.64 |
| Juven | Juvenile tuber | 3.90 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.44 | |
| Mother_Juven | Mother tuber of Juvenile | 4.87 |