Gene detail

Detail information of GWHGAAEX017055/evm.TU.scaffold_8.111

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|15806543\|ref\|NP_295256.1\|	7.00E-31	hypothetical protein DR_1533 [Deinococcus radiodurans R1]
nr	gi\|672119720\|ref\|XP_008783108.1\|	0	PREDICTED: E3 ubiquitin-protein ligase ORTHRUS 2-like [Phoenix dactylifera]
Swissprot	tr\|Q8VYZ0\|ORTH2_ARATH	0	E3 ubiquitin-protein ligase ORTHRUS 2
trEMBL	tr\|M0UB32\|M0UB32_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP21240_001}
TAIR	AT1G57820	0	Zinc finger (C3HC4-type RING finger) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000004	5383997	5397736	-

Transcript Sequence
>GWHTAAEX017055 TCTCTCCCTCCCGAACTTTCCCTCCAAAAAATAGAAAAAAAGGAAAAATGCCAAACCCCCGTTAAAACCCCTCTTCCTCTATAGGAGATTTGACCTAGCTTCCATTCCCCCATGGCTCCGGCGTTAGATCTCCCATGCGACTCCGACGGCGTTTGCATGATCTGCAAGAAAAAGGCATCGGAACTAGAGGCAGTAACTTGCCGGACCTGCGCCACGCCTTGGCACGTTCCGTGTCTCTCCAATCCGCCGAAGTCTCTCGCCTCCATTGCTGAATGGCAGTGTCCCGACTGCTTTTTTCCACCCGTTGGCGTTCTGGCTTCCCTTTCGACCGCAGAAACCGTCTCCGGAGGTCCTTCCGGCGACCTCATCGTCTCGATCCGGGCGATAGAGGCGGACGGCTCATTGACGGAGAAAGAGAAGGCTAGGCGTCGGCAGGAGCTAATGAGTGGCTTATCTGGGATAGAAGAAAATCAGAGAGATTCAAGGAACGATGATAAAAAGGGTGGCGGCGGTGCTAACGATGTGCTCGGCTTGCTGGATGATAAGTTCAACTGCTCTTTCTGTATGCAAATCCCCGACCGGCCAGTCACAACACCATGTGGTCATAATTTCTGTTTGAAGTGTTTCCAGAAGTGGCTCGGCCAGGGTAGGCACACTTGTGCAAAATGCAGAGCTCCCGTTCCTCCAAAGATGGTCTCTCAGCCAAGAATAAACTCTGCACTTGTAGTTGCTATACGAATGGCAAAAGCAGTGAAGCCTGTGTCCGGCAACAAAGCAAACGTTTATCATCATATATGCAATGAAAACAGGCCTGAGAAAGCATTTACTACTGAACGGGCAAAGAGAGCTGGAAAAGCTAATGCATGCAGCGGACAAATCTTTGTAACAGTTCCTCCTGATCATTTTGGTCCTATCATGGCAGAGAATGATCCTAAAAGGGGACAAGGAGTGCTGGTGGGCGAGTCTTGGGAGGATCGAATGGAGTGTAGACAATGGGGTGCACATCTTCCTCATGTTGCTGGAATTGCTGGGCAGTCTGGATATGGTGCTCAATCAGTTGCTCTGTCAGGAGGATATGAAGATGATGAGGATCATGGAGAATGGTTTTTGTATACTGGAAGCGGTGGGAGAGACCTAAGTGGAAATAAAAGAACTAGTAAGGATCAATCATTTGACCAAAAGTTTGAAAAGCTTAATGAAGCTTTGCGGGTTAGTTGTAAAAAGGGCTATCCTATTAGAGTTGTGAGGTCCCATAAAGAAAAACGTTCTGCATATGCTCCTGAATCTGGCGTGCGCTATGACGGAATTTATAGGATTGAGAAATGTTGGCGTAAAGTTGGAATTCAGGGATTTAAAGTGTGCAGGTACCTTTTTGTTCGGTGTGACAATGAGCCAGCTCCATGGACCAGTGATGAGAATGGTGACCGCCCTCGACCATTACCTGATATCAAGGAATTGAAGCTTGCCAGTGATATCACAGAAAGGAAAGGAGAGCCTGCATGGGATTATAATGAAAAGAATGGATGGGATTGGGCCAAGTCTCCACCACAGAGCAAAAAGATAATTGCTGCAGGAAACATCGAAGATATGAATGGAAGAAAACGAAGGGTTAAAAGCACCAACGTGAAAGACAGGCTGCTTAAAGAATTTAAATGTGAGATTTGCACAAGGGTTATGACTTTTCCCCTAACAACGCCATGCGCTCACAATTTCTGCAAGAAGTGCCTCTTGGATGCTTATGATAATCAGTCTTTCACAAGGGAAAGGACAAGCGGAGGTCGAACCCTTAGGGCACAGAAGATTGTAAAAAAGTGCCCTTCGTGCACCGCAGACATTCGTGACTATTTGCAAAATCCACAGGTAAACCTAGAGCTTATGGATTTGATAGATTCTCTTCATCAGAAGATCAAGGAAGAGAATGCTGCTGAGAATGATGACTATAAAAATGACTATAAATATGATGCTGAGGAGGCCGAGAATGGGAAACCAAACACACGGAATGGTGATAATGATTCTGTTGTTGGCTTGGATGACAGTGACTTGATCGAGAACAAAGGTTTGGTGGATGATGAATCCGTGGGCAAAAACGATTGTGCTGTGCTTGGCGAAAAGTCGCTCAAGTCCGTGAACATTGATTCTGAAAAGGAGAATGGTGCTAAAGGGCTTGGAAAGAAGAGGAAGCGGCAATCTACTAAATCTGGAGCTAATAATAAGGCTGCCAAGGTTAGAGTCAATGGCTGTTCATTTAGTAAGGGAAAGCTTCAATAAAGCTCCTAGAAAGAAAGAAAACGTGGATTTGACAGCAAGATCAAATAGTGGTGCATAGAATTGAAGAGGCTGTAAAATCTAAACGGGAAATGCTTTTGCCTGCATATTATGCTTTTTGTTGATTTTGTTTTCCAAAAATCTTGGTTTTTCTTATAAAGTATCCATTATGGAATTTAAAATATGTTTAATGATGTAATGATTGCTATTAATACTTGCTTAATGGGAAAAAATTATGTGCTATTGCAATCGTTCTCAATAAAATGCAGCTAATACCATTCTGC

Network for GWHGAAEX017055

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13920.5	zf-C3HC4_3	146	190	1.60E-07
PF02182.16	SAD_SRA	278	426	4.70E-47
PF13445.5	zf-RING_UBOX	515	548	1.20E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.470
SRP064423	SRR2545915	Juvenile tuber	4.100
SRP108465	SRR5643513	five period of Gastrodia elata	8.060
	SRR5643514	five period of Gastrodia elata	8.750
	SRR5643515	five period of Gastrodia elata	6.120
	SRR5643524	five period of Gastrodia elata	8.230
	SRR5643525	five period of Gastrodia elata	0.230
	SRR5643528	five period of Gastrodia elata	0.420
	SRR5643658	five period of Gastrodia elata	0.570
	SRR5643659	five period of Gastrodia elata	2.490
	SRR5643660	five period of Gastrodia elata	4.130
	SRR5643661	five period of Gastrodia elata	2.510
	SRR5643662	five period of Gastrodia elata	1.310
	SRR5643663	five period of Gastrodia elata	1.890
	SRR5643664	five period of Gastrodia elata	1.020
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.000
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.990
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.830
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.090
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.480
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.920
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.960
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	19.190
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.870
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.670
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.670
SRP279888	Gastro	Gastrodia elata tuber	1.59
	Juven	Juvenile tuber	5.61
	Mother_Gastro	Mother tuber of Gastrodia elata	1.07
	Mother_Juven	Mother tuber of Juvenile	2.08