Gene detail

Detail information of GWHGAAEX017061/evm.TU.scaffold_8.118

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|428312387\|ref\|YP_007123364.1\|	3.00E-08	hypothetical protein Mic7113_4259 [Microcoleus sp. PCC 7113]
nr	gi\|743884260\|ref\|XP_010909633.1\|	1.61E-151	PREDICTED: uncharacterized protein LOC105035684 [Elaeis guineensis]
trEMBL	tr\|M0RUK9\|M0RUK9_MUSAM	2.00E-146	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P22790_001}
TAIR	AT1G08640	5.00E-94	Chloroplast J-like domain 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000004	5612458	5651152	+

Transcript Sequence
>GWHTAAEX017061 CAATTGATCCGATACAAATTAATGATCTTTTTGTTTTCCTTAAATATCATCACACCAACTATCAGGTCTAGTTTTGCTAACATTCTGAATTTAGAGCTTTTCGCTAAACCCTTCTGCTGAAGATCAGGTGGCCCTGTTTCCCATCGCAGCAATGGCAAGTGCCATCCCGTTCGCCGCCGTCCTCCCACCACGTTTTATCAGTTCAAGGAGCCACTTTTCTTCCATCCCATCGTTCCAGATGGCTCCCCTGCTCACCTCTGCAAGGTTTTGTTGGAGGTCTAAGATGCACCGGGAAATAACTTGTATGGCCACATCTGCAGCGGGAAGCCCACAACTGGATGGTGATGAGAATCCATATGAGGTTCTTGGTGTGAATCCAATAGCTGGATTTGATATGATGAAGTCAGCATATACAAGGAAGAGAAGGGATGCTGAGAAGAGAGGCGATGAAGCATATTTGGCCAAATTAGAGAAAGCATATGATAAAATCATGATGTCACAACTTAAAAGCCGGAAGAAAGGTCTCACATTTGGGCAATTCCAGGTATCGAAGGATATTAAATATGCTGACAAACAGCCAATTGTACCATGGGGGCCCAGGCATTCAAAATCCAGCGTGAAGGACATGCGGATCAATATGGGCATTTCTGCAACCTTTGCAATATGGATTTTTGTCAAGCGCAATGCTGAATGGAGGCCTCTGCAATTTCTAGCTTTCATATATTTTTACCGTATCTTTGAGAAGCTAAAAGCTTCTGAACCAGAAGTATCCCCAACCTTAAATGAGTATGGTGAGGATGAAGGTCGTGGCTTGCGCATGGGAAAGCGCATGCTTCGTTCTCTTTCGCTTGTTTTTGGATGTATTGCTGTTTCTTCTTTGGGATACACAGGAATTCTTAATTTGATCGAGCTTCTTGGACAATACATACCTGTGCTTTTATACAACAATCAGGAACTGATTGTTAGTATGGCCACATCAATTCTGCTCTACATCATGGCTTCCTATTACAGATAAGGTCAGGAAAGTGATGGTGCTGTGTCATTGCATATCTTCTCACTGATTCTGAATGGCTGGGTGAATTTTTGACTGGAATATATATCTTATTCTTCCAAGGGATCTCAACTAATATCATAGGATGATTTGCATTAGGTAGATAATTGAAATATTATGTTGCATGTGCATATTTTTAGAGTATTTAATATTATTAGGCTTATATATATCGAGTGAAAATGTCCATGTTTGCGTAATCTTTATATTTTTTTTGCATACTTAACTGAGTAATCAGTACTTCAAAGCCTATTAGGCTTTGCCTCCTGGACTAATACTTATTATTTAGTGGGCTGCATTTATTCTTGTTAATAAAGTTAACTCTTGATTTGGCTTGTCAAATGGGTCAGGTTAGGCTCAATTATCTCCTTACTTTGTGATTCAAACCAAGTACCAAGTTCTTTGCTGGTAGGCCGTCTATTGCTTTGTATCAGCA

Network for GWHGAAEX017061

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11833.7	CPP1-like	80	180	2.30E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	16.750
SRP064423	SRR2545915	Juvenile tuber	13.840
SRP108465	SRR5643513	five period of Gastrodia elata	12.430
	SRR5643514	five period of Gastrodia elata	11.860
	SRR5643515	five period of Gastrodia elata	18.470
	SRR5643524	five period of Gastrodia elata	16.470
	SRR5643525	five period of Gastrodia elata	19.400
	SRR5643528	five period of Gastrodia elata	19.770
	SRR5643658	five period of Gastrodia elata	13.290
	SRR5643659	five period of Gastrodia elata	14.390
	SRR5643660	five period of Gastrodia elata	13.940
	SRR5643661	five period of Gastrodia elata	14.750
	SRR5643662	five period of Gastrodia elata	16.890
	SRR5643663	five period of Gastrodia elata	16.530
	SRR5643664	five period of Gastrodia elata	13.310
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.760
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.110
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.910
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.380
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.690
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	8.460
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.780
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.830
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.230
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	15.180
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.990
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.990
SRP279888	Gastro	Gastrodia elata tuber	18.67
	Juven	Juvenile tuber	11.44
	Mother_Gastro	Mother tuber of Gastrodia elata	48.20
	Mother_Juven	Mother tuber of Juvenile	41.31