Gene detail

Detail information of GWHGAAEX017068/evm.TU.scaffold_8.126

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|262193487\|ref\|YP_003264696.1\|	3.00E-47	MATE efflux family protein [Haliangium ochraceum DSM 14365]
KOG	KOG1347	0	Uncharacterized membrane protein, predicted efflux pump
nr	gi\|672120194\|ref\|XP_008783354.1\|	0	PREDICTED: MATE efflux family protein 5 [Phoenix dactylifera]
Swissprot	tr\|Q9SIA4\|MATE5_ARATH	2.00E-76	MATE efflux family protein 5
trEMBL	tr\|U5DJ81\|U5DJ81_AMBTC	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}
TAIR	AT1G71870	0	MATE efflux family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000004	5747286	5749289	+

Transcript Sequence
>GWHTAAEX017068 CGCATCGGCAAGACAAAATCCTCGCAATAAAGGAAAGCGATCGGCGCAATCTAAACGTTCCGTCTTTTGTAAGAAAAAAAGACGATATTTATGAGGATAATAAAGCGGGGCACCCAAAAGCGCATTTGCTTCGAAAAAAGTATATAACAAAGCAGCGGAACCAACCAAAAGACAACGGGGGCTGCTGCAATGGGGGAAGAGGAGAAGCTGGGTAGAGACATCTGGGGCGAGGTGGGAGCTCTGTGGAAGCTGGCGGGTCCGATCACAGCGATGAACTGCGTGGTTTACCTGCGCGCGATGATCTCTGTGGTGTGCCTGGGGCGTCTGGGTCCAGTGGAGCTCGCCGGCGGCGCTCTCTCGATCGGGTTCACCAACATCACCGGCTACTCCGTGCTCTTCGGGCTGGCCTCCGGGCTCGAGCCGCTGTGCAGCCAGGCGTACGGTTCCCGCAACTGGGACCTCATATCGCTGTCCCTGCAACGGGCCATCCTGCTCCTGCTGGCGGCCTCGGTGCCCATCTCCTTCCTGTGGCTGAACATGGGGCCGATCCTCATCTCCCTGGGCCAGGACCCTTCCATCACCTCCGCCGCCGCGTCCTACTGCCTCTTCTCCCTGCCCGACCTGCTGACCAACGCGTTTCTGCAGCCCCTCCGCGTGTTCCTACGCTCGCAGGGGATCACGAAGCCGATGGCAGCCTGCTCTGCCGCCGCCGTCGTTCTACACCTCCCCCTTAGCCTCCTCCTGGCTTTTACCCTCGGCCTCGGCATCCCCGGAGTGGCCCTCGCCTCCGCTCTCACCAATCTCAACATGGCCCTCTTCCTTCTCGCCTACCTCCGATTTTCCGGCGCCTGCGCGCTCAGCTGGCGCGGTTGGTCCCGCGCCTCCCTCGCACGCCTCGCCCCCCTCCTCCGCCTCGCCGTCCCCTCCTGCCTCGGCGTCTGCCTCGAGTGGTGGTGGTACGAAATCATGACCGTCCTTGCCGGTTACCTCCCCAATCCTACGGCCGCCGTCGGCGCCACCGCCATCCTCATTCAGACCACCAGCCTCATGTACACCGTCCCCATGGCCCTGGCTGCCTGCGCCTCCACCAGGGTCGGCAATGAGCTCGGTGCAGGCAGACCGCAATCCGCCAGGTCCGCCGCCACCGCAGCCCTCGCGTGCGCCGTCGCCATCGGAGCCCTTAATCTCGCCTGGACCGCCCGATTCAAAGCCAGCTGGCCCACCCTTTTCACCCAAGACGCCGCCGTCGCCGGCCTAGCCGCCGCCGCCATGCCCCTCGTCGGCCTCTGCGAGCTGGGCAACTGCCCCCAGACCACCGGCTGCGGCGTCCTGCGGGGAACCGCCAGGCCCGCCATCGCCGCCAGGATCAATCTCCTCTCTTTCTACCTCGTCGGCACGCCCGTGGCCGTCGGATTGGCTTTCGGCCTCCGCATCGGCTTTGGCGGCCTCTGGTACGGCCTCCTCACGGCCCAGGCCGTCTGCGCTGTGTCCGTCTTGGTTGTCGTTCTCGGAAAGATCGATTGGGAGGCTGAGGCCGCGCGGGCCAAGAAACTCGCCGCAGTTGAATTGGCCGCCGCCGGAGAGGACCAGGAGAAGGCGCTCTTGGCAACATTTGCGGATGAGCTCTGAGGGTTGTTTTTTATTTTTGTTTCAGCTGGAGCAAGAAGGAGGCGCAAAAGGTAAAGCAATGTGTTTTTTGCCATTTACAGAAAGAAAAGACGAGGAAAAGGTAGCTTTTTCCAGCAAGCAGATGGTGGAGGGCGCACTGTGGAGCACCTGCTTTGGCGTTTAGCTCCGTTTTTAGCATTATATATTCATATATATTTATGTGTTTTTGTAGGAACGGTCCGGTCCGATGGGGGACTGGTGGGCTCGGCTCGTTAGGGTCCGGCTGAAAGAGGAAATCTGGACCCCGGCCGCAGCCGGCTTTTTTCTCATGGTTTACCGGTTTACTAGGAAAGGACTAGTTTTATTTATATTTATCTGAAAATTTTTAAATTTCTG

Network for GWHGAAEX017068

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01554.17	MatE	24	183	8.20E-36
PF01554.17	MatE	245	406	5.20E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0042910	Molecular Function	xenobiotic transporter activity
GO:0015297	Molecular Function	antiporter activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.280
SRP064423	SRR2545915	Juvenile tuber	1.460
SRP108465	SRR5643513	five period of Gastrodia elata	12.140
	SRR5643514	five period of Gastrodia elata	2.050
	SRR5643515	five period of Gastrodia elata	2.570
	SRR5643524	five period of Gastrodia elata	2.090
	SRR5643525	five period of Gastrodia elata	4.630
	SRR5643528	five period of Gastrodia elata	1.900
	SRR5643658	five period of Gastrodia elata	1.760
	SRR5643659	five period of Gastrodia elata	0.420
	SRR5643660	five period of Gastrodia elata	0.590
	SRR5643661	five period of Gastrodia elata	0.500
	SRR5643662	five period of Gastrodia elata	0.730
	SRR5643663	five period of Gastrodia elata	0.050
	SRR5643664	five period of Gastrodia elata	1.230
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.610
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.650
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.090
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	11.010
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	20.340
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	18.930
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.030
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	12.350
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.840
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.040
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.000
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.000
SRP279888	Gastro	Gastrodia elata tuber	0.20
	Juven	Juvenile tuber	1.75
	Mother_Gastro	Mother tuber of Gastrodia elata	3.71
	Mother_Juven	Mother tuber of Juvenile	1.30