Detail information of GWHGAAEX017069/evm.TU.scaffold_8.127
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|113478270|ref|YP_724331.1| | 2.00E-47 | cyclic nucleotide-binding protein [Trichodesmium erythraeum IMS101] |
| KOG | KOG0498 | 0 | K+-channel ERG and related proteins, contain PAS/PAC sensor domain |
| nr | gi|672120204|ref|XP_008783360.1| | 0 | PREDICTED: potassium channel AKT2 [Phoenix dactylifera] |
| Swissprot | tr|Q75HP9|AKT2_ORYSJ | 0 | Potassium channel AKT2 |
| trEMBL | tr|M0T9S0|M0T9S0_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P24240_001} |
| TAIR | AT4G22200 | 0 | potassium transport 2/3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000004 | 5756626 | 5777290 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017069
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00520.30 | Ion_trans | 69 | 317 | 3.90E-32 |
| PF00027.28 | cNMP_binding | 408 | 492 | 1.40E-17 |
| PF12796.6 | Ank_2 | 537 | 622 | 3.40E-12 |
| PF11834.7 | KHA | 749 | 818 | 2.20E-19 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0006813 | Biological Process | potassium ion transport |
| GO:0006811 | Biological Process | ion transport |
| GO:0005249 | Molecular Function | voltage-gated potassium channel activity |
| GO:0005216 | Molecular Function | ion channel activity |
| GO:0005515 | Molecular Function | protein binding |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.910 |
| SRR2545915 | Juvenile tuber | 7.580 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.320 |
| SRR5643514 | five period of Gastrodia elata | 9.330 | |
| SRR5643515 | five period of Gastrodia elata | 10.730 | |
| SRR5643524 | five period of Gastrodia elata | 7.170 | |
| SRR5643525 | five period of Gastrodia elata | 12.060 | |
| SRR5643528 | five period of Gastrodia elata | 6.760 | |
| SRR5643658 | five period of Gastrodia elata | 12.440 | |
| SRR5643659 | five period of Gastrodia elata | 7.590 | |
| SRR5643660 | five period of Gastrodia elata | 3.930 | |
| SRR5643661 | five period of Gastrodia elata | 4.710 | |
| SRR5643662 | five period of Gastrodia elata | 3.730 | |
| SRR5643663 | five period of Gastrodia elata | 13.020 | |
| SRR5643664 | five period of Gastrodia elata | 4.040 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.250 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.160 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.520 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.670 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.350 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.200 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.660 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.300 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.250 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.280 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.340 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.340 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.04 |
| Juven | Juvenile tuber | 2.93 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.22 | |
| Mother_Juven | Mother tuber of Juvenile | 0.59 |