Gene detail

Detail information of GWHGAAEX017071/evm.TU.scaffold_8.130

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0698	Serine/threonine protein phosphatase
nr	gi\|672175409\|ref\|XP_008807757.1\|	PREDICTED: probable protein phosphatase 2C 33 [Phoenix dactylifera]
Swissprot	tr\|Q10MN6\|P2C33_ORYSJ	Probable protein phosphatase 2C 33
trEMBL	tr\|C5WMK7\|C5WMK7_SORBI	Putative uncharacterized protein Sb01g037810 {ECO:0000313\|EMBL:EER92392.1}
TAIR	AT1G09160	Protein phosphatase 2C family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000004	5893765	5928274	+

Transcript Sequence
>GWHTAAEX017071 CAAAGGATGGCACCGGTGTTGATGCTTATAAAATTCCAATTCACAGTCTTTTTGCTCATCAACAAAAAGCACAGAATCCGGCAATATCATCCCTGTCTGAACGCGTAGTCTCTTTATCGCTGCTTGCCTTTTCTTCCACCGCTGCTCTGTGCTGGCTGAAATTTCTTTTGGGGAAGCTCAAAGCCAGGCTTCGGATCTACCAGCTCCCCCAGATTCCTCGGCGACGGGGAAATGCAGCTCCTGAGATGAAAGTGCACTTCGGATTCTACAGCAAGGAATGAACTAGGGTTTCGACCTGGACGAATCCCTCAAAATGAATATCACGCAGCATAGAGATCTGAGTGCCCGCCCTCATCCCATAGCCCTAGCCACCCTTATCGGGCGAGAATTTCGAGGGGGCAGGACAGAGAAGCCGCATGTCCGCCACGGCCACGCTGGGCTCGCCAAGCGCGGCGAGGATTACTTTCTCATCAAGCCCGACTGCCATCGGATCCCTGGAAATCCCTCCAGTTCGTTCGCGGTATTCGCGATCTTTGATGGGCATAATGGATCTTCTGCCGCGGTTTTTGCGAAGGAGCATCTTTTGGACCACGTAATGGGAGCGATCCCCCCTGGATTTGGGAGGGTGGAGTGGCTCCATGTGCTTCCACGGGCAATGGTCGTGGGGTTTGTAAAAACTGATATCGAATTCCAACGGAAAGGAGAAGCGTCTGGAACCACGGCTACACTTGTAGTGATTGATGGGCTGACTGTCACTGTTGCATCAGTGGGTGATTCCAGGTGTATATTGGATTCCAAGGATGGAGCAATTTCGTTGCTGACCGTTGATCATAGACTGGAGGAGAATGAAGAGGAAAGGGAGCGGGTAACTGCCAGCGGGGGTGAAGTGGGGAGGCTCAATCTTTGTGGTGGTCATGAGGTTGGTCCTCTTAGATGCTGGCCTGGTGGATTGTGCCTCTCAAGGTCTATAGGGGATATGGATGTTGGGGAATTCATTGTCCCCATTCCTCATGTTAAGCAAGTTAAACTTCCTGAATCTGGTGCTCGACTAATTATAGCCTCCGATGGTATATGGGATGCACTTTCATCTGAGGTGGCTGCAAAATGCTGTCGAGGTTTGTCTACTGAGCTTGCTGCTAAACTGGTTGTTAAGGAAGCCTTGAGAACAAGTGGCCTTAAGGATGATACTACTTGCCTTGTTGTTGATGTTATTCCATCAAACTATTCTACCATACCGGCATCTCCCAGGAAACTCCAGAATAAATTTAAGTCTTTATTCTTTGGAATGCCTCAAGATTCTCTCAGTAAGATTACAAATAAATCTTCTGTTGGGGCTATCGAAGAACTTTTTGAGGAAGGCTCTGCCATTCTTGAAGAAAGGTTGGGCAGCAATTTTCCATCAAAGGCAAATGGTCTGCCTTACAGATGCGCAATCTGCCAAACAGATCAGCCGCCTAACGATGGTTTATCCGTCCCTTTAGCCCCGCCCCTGCTACCATTATCTAAAGCCAGGGAAGGCCTGTTTTTCTGCACTGATTGTAAGCGAAAAAAGGATGCGATGGAAGGGAAAAGATCGACCCGGCCGACTGTGCCGAGGTAAAAAAAATAACTTAAAAAACTAAAATAAAAATAAAAAAAAGGAACTCGGTTTCCCCAACTATCTGCCTCCCAGTATATTCAAGCTAGAGGAGGTGTGGTGCGTTCCTTCTGCTGCAAAGCTGATGGAGAATTACCCCATTTATGCATTTGTTGTTTTGTGGCAGTAAATTGTATTATTGTTTGATGAACTAACCAAACTCATCAGAAATTATGATAGTTTGATGAACTCACTAATCAGTGGCACAAGCGCTTATTATTGGCTTATGATTTACTGAACAGAACTTTGATTCACTATGTATTTGTTACAATCTTACAAGAAAATTCCCCATGTTGTTATCCCATCACATTTATTATTCTCTGAAAAAAATCAAAGAAATATGAGCAATCCTACTTTAATGCAATCAAAGAAACATGGATTTCATCTTCATGCGCTGATTGAGGTTAAAGCTGAGGCAGCTTTATTCAGAGATGAAGCCTCGCTGCTTCTATGCTGGCTCTGATATGCTCTCACGGCCGCCGGGGCGGTGGGTCCCGGATAGTACCGGTTATGGGAGCCTTCCTCTTCCAGGCGCAGTCTCTGCATTCTCAGGGCGGTCAGATAGAGTGCCACTCCAAGGAAGACAGTGATCAATCCGAAGACTCCGGCGACTGCAAAGAGCCCGGGACGAACTGCCGGGCATGTCACCCTTGGTTTCGTCCAGTTGTACAGGTGACCGGACTCAACACCTATTGCTATCATCAGAAGCACCTCCGCCACCGCAAAGCATATCCTGCATCGAAAACAGCCGGCTCGAGCTTAGGACTACCCTACTTATTGTGTTTTGTTATACATGATTTTATAGACGTGAGTGGGTTTTGTGGAAAGAAATTTGGGCCGTTGAATTACCAAGTTGTCAGAAAGAGGATGCAAGTTTGCCATTTCCGCGCCCTGGCGGCGGGAGACACTTCGCTCGGATCACCTGTTGCTACCGATGGCGTGGGGCCGGTGATTGCGACGAGCATGTAGGCGTGCTCGGCAAACATGGCTACGGCGAAAAGGAGGAATGCTGCCAAGGCGAATGCCAGCGGTGTTTTCCCACTGCTGCTGTACGAGCACCTGTATCCTTTGCCACTGTCTTGGATGGTCAGGATCATCCATGTTGGCTTTGCCAAAAGCAACATCAAATAAAATTGTTAGCTCTGATATAATTTATGATTGATCTTATTATCCCATTCATTGATACCTGGGACTTGGAGGCCTCGCCTGCGAGGCATAGAATGAATCCGGCGAGGCCGCAGAGGACGGAGAGCCCCACGAGGAAGACAGCGACCCTGCTGCTGATGTCGGCGGTGCGGTAGTTTCTGATGGACAGATCATCATGGTTGATTGTTGCCATTACCTTTTTCTTCCTTCTTTCTGACTTGTGATTCTTCTGGTCATCCACATTGAAAGCCGTATATAAAGGCAGCATTTTGGACTGCCGGAGAGGATAGGAATCTCAGAAGATGGGTATCACTTGTTGTTGGGGTACATGCCATTTGCTTCATTGAGG

Network for GWHGAAEX017071

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00481.20	PP2C	63	284	2.20E-36

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.680
SRP064423	SRR2545915	Juvenile tuber	7.390
SRP108465	SRR5643513	five period of Gastrodia elata	14.050
	SRR5643514	five period of Gastrodia elata	13.050
	SRR5643515	five period of Gastrodia elata	11.790
	SRR5643524	five period of Gastrodia elata	12.820
	SRR5643525	five period of Gastrodia elata	23.840
	SRR5643528	five period of Gastrodia elata	23.210
	SRR5643658	five period of Gastrodia elata	28.160
	SRR5643659	five period of Gastrodia elata	8.150
	SRR5643660	five period of Gastrodia elata	8.060
	SRR5643661	five period of Gastrodia elata	8.860
	SRR5643662	five period of Gastrodia elata	7.990
	SRR5643663	five period of Gastrodia elata	8.490
	SRR5643664	five period of Gastrodia elata	6.510
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.240
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	13.610
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.230
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.130
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.910
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.110
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.550
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.140
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.740
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.400
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.120
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.120
SRP279888	Gastro	Gastrodia elata tuber	6.51
	Juven	Juvenile tuber	10.55
	Mother_Gastro	Mother tuber of Gastrodia elata	11.28
	Mother_Juven	Mother tuber of Juvenile	11.65