Detail information of GWHGAAEX017076/evm.TU.scaffold_8.135


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|325110517|ref|YP_004271585.1|7.00E-24class I peptide chain release factor [Planctomyces brasiliensis DSM 5305]
KOGKOG27264.00E-81Mitochondrial polypeptide chain release factor
nrgi|645242916|ref|XP_008227747.1|3.00E-99PREDICTED: uncharacterized protein LOC103327234 [Prunus mume]
Swissprottr|F4I532|PRFB2_ARATH2.00E-11Peptide chain release factor PrfB2, chloroplastic {ECO:0000303|PubMed:21771930} (Precursor)
trEMBLtr|A0A061FQZ5|A0A061FQZ5_THECC6.00E-98Class I peptide chain release factor isoform 2 {ECO:0000313|EMBL:EOY16959.1} (Fragment)
TAIRAT1G333304.00E-81Class I peptide chain release factor

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000459927696056632-
Transcript Sequence

Network for GWHGAAEX017076

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00472.19RF-1871457.10E-20
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006415Biological Processtranslational termination
GO:0003747Molecular Functiontranslation release factor activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms12.830
SRR2545915Juvenile tuber20.200
SRP108465SRR5643513five period of Gastrodia elata15.420
SRR5643514five period of Gastrodia elata16.700
SRR5643515five period of Gastrodia elata14.900
SRR5643524five period of Gastrodia elata15.310
SRR5643525five period of Gastrodia elata9.350
SRR5643528five period of Gastrodia elata10.690
SRR5643658five period of Gastrodia elata10.590
SRR5643659five period of Gastrodia elata20.560
SRR5643660five period of Gastrodia elata17.550
SRR5643661five period of Gastrodia elata16.880
SRR5643662five period of Gastrodia elata17.350
SRR5643663five period of Gastrodia elata17.310
SRR5643664five period of Gastrodia elata17.470
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_114.320
SRR6049655Rhizomagastrodiae_C368-T10_good_121.050
SRR6049656Rhizomagastrodiae_C368-T07_good_119.790
SRR6049657Rhizomagastrodiae_C368-T07_good_115.530
SRR6049658Rhizomagastrodiae_C368-T04_good_113.080
SRR6049659Rhizomagastrodiae_C368-T04_good_19.990
SRR6049660Rhizomagastrodiae_C368-T01_good_114.510
SRR6049661Rhizomagastrodiae_C368-T04_good_117.660
SRR6049662Rhizomagastrodiae_C368-T01_good_118.620
SRR6049663Rhizomagastrodiae_C368-T01_good_115.860
SRR6049664Rhizomagastrodiae_C368-T10_good_119.260
SRR6049665Rhizomagastrodiae_C368-T10_good_119.260
SRP279888GastroGastrodia elata tuber 17.90
JuvenJuvenile tuber16.54
Mother_GastroMother tuber of Gastrodia elata 8.52
Mother_JuvenMother tuber of Juvenile 8.94