Gene detail

Detail information of GWHGAAEX017082/evm.TU.scaffold_8.141

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|257387472\|ref\|YP_003177245.1\|	3.00E-29	cytochrome P450 [Halomicrobium mukohataei DSM 12286]
KOG	KOG0156	3.00E-132	Cytochrome P450 CYP2 subfamily
nr	gi\|659068773\|ref\|XP_008446152.1\|	0	PREDICTED: uncharacterized protein LOC103488960 [Cucumis melo]
Swissprot	tr\|P24465\|C71A1_PERAE	9.00E-148	Cytochrome P450 71A1
trEMBL	tr\|A0A087GUL2\|A0A087GUL2_ARAAL	0	Uncharacterized protein {ECO:0000313\|EMBL:KFK33564.1}
trEMBL	tr\|A0A087GUL2\|A0A087GUL2_ARAAL	2.00E-111	Uncharacterized protein {ECO:0000313\|EMBL:KFK33564.1}
TAIR	AT3G26310	3.00E-132	cytochrome P450, family 71, subfamily B, polypeptide 35

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000004	6216815	6241309	+

Transcript Sequence
>GWHTAAEX017082 ATGCATTCAATTGCACTGTTCGTCTTCCTCCTACTTCTCCCTCTCTTCCTCCTTTTCATAAGCAAAAAGAAAAACCCTCTTCCTCTGCCGCCATCTCCCTCCAAGCTTCCATTGATAGGAAACCTGCACCAGCTGGGCCCACTTCTCTACCGCTCCCTTCAGAAGCTCTCAGCCAAGCATGGCCCGCTCATGCTTCTCCAGCTGGGCCGCGTTCCAACCCTCATTATCTCAAGTCCAGAGATGGCCGAACAGATCCTAAAAACCCACGATCTTGTCTTCGCAAGCCGGCCGGAGGTCAAGGCTTCCAGATTCATCTTCTACGGCATCAAAGACATGGCCTTTGCACCATACGGGGAGTACTGGAGACAGATGCGGAAAGCCTGCGCGATCCATCTCTTCAGTTCTCGAATGGTTCAGTCCTTCAGACACCTGCGGCAAGAGAAGGTGGTTCTCATGCTGGAAAAGATCGCGCGTGCTGCATCCCAGGAAAAGCGTTCTGTTCCTCTGACGGACATTCTGAATGAATTTGCAAGTGAGCTTGTCTGCAGAGCGGTGCTGGGCAGAACGATGGAGAGCAGCAAGATGAGGGGGGCACTCTGTGAGATGATTCACGAGAATTCCTTTCTGTTTGGGTCGTTTTTCGCTGAGGATTTTTTCCCGGGGCTGAGGTGGGTGGATGTGCTTCTTGGATTGGAAGGGAGGCTGGACAGGAATTTGAAGAGATGGGATGCGCTGTTTGAGGAAGTTTTTGAGGATCATCGTCGAGCGAATGGGTCCAAGACTGGGGAGAAAGAGGAGGATCCTGATTTTGCTCAGGTGCTCCTCTCCTTGCAACAAAACTGGATCGCCGATTTCCCCTTCGAAAACGATCACATTAAAGCCATCTTACTCGATATGATCACCGCCGGAACGGAGACAACTGCTGGCGTATTGGATTGGAGTATGGCTGAACTACTTAGAAACTCTGAAGTTATGAAGAATGTACAAACAGAATTAAGAGAGAATTCTATTACAGCAACCGGATTACCGATACAGGAAGAAGATTTGAGTAAAGTTAACTATTTAAGAGCTACAATAAAAGAAACACTTCGCCTACACCCTCCTGCACCATTATTATTGCCCAGAGAATCCATGCAAGATTGTAAAATTAATGGCTATACAATCCCCAAACAAACAAGGGTCATTGTTAATGCATGGGCTATTGGGAGGGATTCTCAAGCTTGGGAAGCAGCAGAAAAGTTCAAACCAGAGAGGTGGTTCGATTCAACTGTGGAATATAAAGGCCAAGATTTTCATTTCATACCTTTTGGTGCAGGAAGAAGAATCTGTCCAGGGATGAATTTTGCTATGGCAGCTGTTGAGATTGCAATGTTGAACTTACTTTATTTTTTTGACTGGAAGTTGCCTGATGGCATAGATGCGCACGATCTTAATATGCAGGAAGCTCCTGGATTGAGTGCACCGAGAAAAGAAAAACTTGAACTCGTTGCAATACCTCGACATACCTTATGGTTTATCAACTTCATCGGAGGTGCCATGATGCATTCTTTTGTATGGTTCACTGCAATCGTCCTTCTCACATATTATCTCCTTTTTCATCTGTCCTACAAATTCAGGAAAAATCGGCTTCCTCTGCCGCCATCTCCGTCCAAGCTTCCCTTCATAGGAAACCTACACCAGCTGGGCCCAAACCTCCATCGCTCCCTTCACAAGCTGTCGGCCAAACATGGCCCGCTCATGCTCCTTCAGCTCGGCCGCGTTCCAACCCTAATTGTCTCAAGCCCAGAGATGGCCGAACAGATCCTGAGGACCCACGATGTCGTCTTCGCAGATCGCCCTGCACTCAAGGCTGCCAGAATCATCTTCTACGGCGGAAAAAGCTTGATCTTTGCGCCGTACGAAGAGTACTGGAGACAGATGAGAAAAGTCTGCACCATGCATCTTCTCAGCTCTCGAATGGTCCAGCAGTTCAAACACGTGCGGACAGAAGGGGTGGCTCTCTTGCTGGAGAGAATCACACGTGCGTCGGCTTCGAAGGATGCTCAAGTTGCCGTTCCCCTGACTAATCTCCTCTACGAATGTTCTAATGATTTGATGTGCAAGACAGTCCTTGGCGATGTAATAAAGGATGATACGAAAAAGAAGGTTCTGATTGAGTTGATTCGCAATATTAGTCCCTTGTTGGGGGCTTTCTATGCTGAGGACTTTTTCCCTGGGCTGTGGTGGGTTGATGTAATTCTTGGATTGGAAGGTCGGCTGAAGAAATACTTCAGGGGATGGGATGCATTGCTTCAGGAGATTCTTGAGGAGCATGAGCAGATGACTGGGCCTATGAGAAATGATATGAACTTTGCTCAGGTGCTCCTCTCCTTGAAGAAAGAGGGGATGCCGCTGGAAAATGATCATATCAAGTGCTTATTATTGGAGATGATTGCTGCAGGAAATGAGACTACAAGTACTTCATTAGGTTGGATCATTGCTGAGCTAATAAGAAACCCAGCCTCACTGAAAAAGGTGCAACAAGAATTAAGAGAAAATTCTCATGTTACTGCTAGAGGATTAGTGGAGGAGGATGACTTAAGTAAAATGAGCTTTTTAAAAGCAGTTATAAAAGAAGCATTTCGTTTGCATTCACCTGTTCCACTGCTATTACCACGAGAGTCCGTTCAAAAATGTGAAATTCAAGGATATGTAATCCCCAAACAAACACAAATATTTGTGAATGTATGGTCCATTGGAAGGGATCCTCGAATTTGGGAAGCACCAGAGGAGTTTAGACCAGAAAGATGGTTAGATTCTACTGTGGATTTTAAAGGTAAGGATATCATTTTCCTTCCATTTGGTGCTGGAAGAAGAATATGCCCTGGTATGCAATTTGCAGTAGCATCTATTGAACTTGTAATGGCAAACTTGCTTTATTTCTTTGATTGGAAGTTGCCCTTTGGGATGGAAAGCTGCAATATGGATATGAGTGAAGGTCCAGGACTTACAGCTCCAAGAAAACAAAACCTTGAACTTGTTGCAATTCCTCGTCATCTCTATTAG

Network for GWHGAAEX017082

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.21	p450	30	485	1.60E-95
PF00067.21	p450	546	1000	1.30E-99

Protein Sequence

>GWHPAAEX017082
MHSIALFVFLLLLPLFLLFISKKKNPLPLPPSPSKLPLIGNLHQLGPLLYRSLQKLSAKHGPLMLLQLGRVPTLIISSPEMAEQILKTHDLVFASRPEVKASRFIFYGIKDMAFAPYGEYWRQMRKACAIHLFSSRMVQSFRHLRQEKVVLMLEKIARAASQEKRSVPLTDILNEFASELVCRAVLGRTMESSKMRGALCEMIHENSFLFGSFFAEDFFPGLRWVDVLLGLEGRLDRNLKRWDALFEEVFEDHRRANGSKTGEKEEDPDFAQVLLSLQQNWIADFPFENDHIKAILLDMITAGTETTAGVLDWSMAELLRNSEVMKNVQTELRENSITATGLPIQEEDLSKVNYLRATIKETLRLHPPAPLLLPRESMQDCKINGYTIPKQTRVIVNAWAIGRDSQAWEAAEKFKPERWFDSTVEYKGQDFHFIPFGAGRRICPGMNFAMAAVEIAMLNLLYFFDWKLPDGIDAHDLNMQEAPGLSAPRKEKLELVAIPRHTLWFINFIGGAMMHSFVWFTAIVLLTYYLLFHLSYKFRKNRLPLPPSPSKLPFIGNLHQLGPNLHRSLHKLSAKHGPLMLLQLGRVPTLIVSSPEMAEQILRTHDVVFADRPALKAARIIFYGGKSLIFAPYEEYWRQMRKVCTMHLLSSRMVQQFKHVRTEGVALLLERITRASASKDAQVAVPLTNLLYECSNDLMCKTVLGDVIKDDTKKKVLIELIRNISPLLGAFYAEDFFPGLWWVDVILGLEGRLKKYFRGWDALLQEILEEHEQMTGPMRNDMNFAQVLLSLKKEGMPLENDHIKCLLLEMIAAGNETTSTSLGWIIAELIRNPASLKKVQQELRENSHVTARGLVEEDDLSKMSFLKAVIKEAFRLHSPVPLLLPRESVQKCEIQGYVIPKQTQIFVNVWSIGRDPRIWEAPEEFRPERWLDSTVDFKGKDIIFLPFGAGRRICPGMQFAVASIELVMANLLYFFDWKLPFGMESCNMDMSEGPGLTAPRKQNLELVAIPRHLY

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP71A21

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	Biological Process	oxidation-reduction process
GO:0005506	Molecular Function	iron ion binding
GO:0020037	Molecular Function	heme binding
GO:0016705	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.570
SRP064423	SRR2545915	Juvenile tuber	1.860
SRP108465	SRR5643513	five period of Gastrodia elata	10.470
	SRR5643514	five period of Gastrodia elata	3.550
	SRR5643515	five period of Gastrodia elata	4.670
	SRR5643524	five period of Gastrodia elata	3.430
	SRR5643525	five period of Gastrodia elata	0.400
	SRR5643528	five period of Gastrodia elata	0.950
	SRR5643658	five period of Gastrodia elata	0.470
	SRR5643659	five period of Gastrodia elata	1.040
	SRR5643660	five period of Gastrodia elata	1.860
	SRR5643661	five period of Gastrodia elata	1.220
	SRR5643662	five period of Gastrodia elata	0.900
	SRR5643663	five period of Gastrodia elata	1.320
	SRR5643664	five period of Gastrodia elata	1.740
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	14.950
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	18.370
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.260
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	14.500
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	18.040
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	23.770
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	16.520
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	19.500
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.540
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.100
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.900
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.900
SRP279888	Gastro	Gastrodia elata tuber	2.00
	Juven	Juvenile tuber	27.71
	Mother_Gastro	Mother tuber of Gastrodia elata	8.11
	Mother_Juven	Mother tuber of Juvenile	18.14