Detail information of GWHGAAEX017087/evm.TU.scaffold_8.147


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743806782|ref|XP_010927809.1|1.81E-86PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial-like [Elaeis guineensis]
Swissprottr|Q8VYF7|WHY2_ARATH3.00E-68Single-stranded DNA-binding protein WHY2, mitochondrial (Precursor)
trEMBLtr|W5GFH8|W5GFH8_WHEAT7.00E-70Uncharacterized protein {ECO:0000313|EnsemblPlants:Traes_6AS_A92DEAA15.1}
TAIRAT1G712601.00E-67WHIRLY 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000464205496435679-
Transcript Sequence

Network for GWHGAAEX017087

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08536.10Whirly581931.90E-53
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyWhirly

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006952Biological Processdefense response
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003697Molecular Functionsingle-stranded DNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms15.900
SRR2545915Juvenile tuber20.550
SRP108465SRR5643513five period of Gastrodia elata19.590
SRR5643514five period of Gastrodia elata21.630
SRR5643515five period of Gastrodia elata17.520
SRR5643524five period of Gastrodia elata17.050
SRR5643525five period of Gastrodia elata10.200
SRR5643528five period of Gastrodia elata6.870
SRR5643658five period of Gastrodia elata6.230
SRR5643659five period of Gastrodia elata29.240
SRR5643660five period of Gastrodia elata26.230
SRR5643661five period of Gastrodia elata30.440
SRR5643662five period of Gastrodia elata28.680
SRR5643663five period of Gastrodia elata28.070
SRR5643664five period of Gastrodia elata28.270
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_117.190
SRR6049655Rhizomagastrodiae_C368-T10_good_121.710
SRR6049656Rhizomagastrodiae_C368-T07_good_121.340
SRR6049657Rhizomagastrodiae_C368-T07_good_115.890
SRR6049658Rhizomagastrodiae_C368-T04_good_115.570
SRR6049659Rhizomagastrodiae_C368-T04_good_112.170
SRR6049660Rhizomagastrodiae_C368-T01_good_118.090
SRR6049661Rhizomagastrodiae_C368-T04_good_116.680
SRR6049662Rhizomagastrodiae_C368-T01_good_130.860
SRR6049663Rhizomagastrodiae_C368-T01_good_119.650
SRR6049664Rhizomagastrodiae_C368-T10_good_129.040
SRR6049665Rhizomagastrodiae_C368-T10_good_129.040
SRP279888GastroGastrodia elata tuber 27.87
JuvenJuvenile tuber17.07
Mother_GastroMother tuber of Gastrodia elata 5.28
Mother_JuvenMother tuber of Juvenile 5.88