Detail information of GWHGAAEX017089/evm.TU.scaffold_8.149
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|225848211|ref|YP_002728374.1| | 2.00E-134 | ATP-dependent protease ATP-binding subunit ClpX [Sulfurihydrogenibium azorense Az-Fu1] |
| KOG | KOG0745 | 0 | Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) |
| nr | gi|719988358|ref|XP_010252309.1| | 0 | PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Nelumbo nucifera] |
| trEMBL | tr|K4C772|K4C772_SOLLC | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc06g063410.2.1} |
| TAIR | AT1G33360 | 0 | ATP-dependent Clp protease |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000004 | 6469526 | 6525547 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017089
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07724.13 | AAA_2 | 280 | 484 | 1.00E-44 |
| PF10431.8 | ClpB_D2-small | 491 | 562 | 5.50E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03544 | clpX, CLPX | Cell cycle - Caulobacter | map04112 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006457 | Biological Process | protein folding |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0051082 | Molecular Function | unfolded protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 13.280 |
| SRR2545915 | Juvenile tuber | 11.500 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 21.600 |
| SRR5643514 | five period of Gastrodia elata | 16.100 | |
| SRR5643515 | five period of Gastrodia elata | 24.990 | |
| SRR5643524 | five period of Gastrodia elata | 20.470 | |
| SRR5643525 | five period of Gastrodia elata | 16.180 | |
| SRR5643528 | five period of Gastrodia elata | 17.740 | |
| SRR5643658 | five period of Gastrodia elata | 20.090 | |
| SRR5643659 | five period of Gastrodia elata | 9.490 | |
| SRR5643660 | five period of Gastrodia elata | 9.100 | |
| SRR5643661 | five period of Gastrodia elata | 9.540 | |
| SRR5643662 | five period of Gastrodia elata | 13.460 | |
| SRR5643663 | five period of Gastrodia elata | 12.000 | |
| SRR5643664 | five period of Gastrodia elata | 10.760 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.050 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 16.540 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.520 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.860 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.540 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 13.150 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.700 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.340 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.440 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.630 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.160 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.160 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 14.55 |
| Juven | Juvenile tuber | 12.08 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 67.24 | |
| Mother_Juven | Mother tuber of Juvenile | 70.88 |