Detail information of GWHGAAEX017090/evm.TU.scaffold_8.151
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|427726014|ref|YP_007073291.1| | 2.00E-07 | RNP-1 like RNA-binding protein [Leptolyngbya sp. PCC 7376] |
| KOG | KOG0128 | 0 | RNA-binding protein SART3 (RRM superfamily) |
| nr | gi|672129604|ref|XP_008788313.1| | 0 | PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q9CAE4|U1131_ARATH | 5.00E-07 | U11/U12 small nuclear ribonucleoprotein 31 kDa protein |
| trEMBL | tr|M0TNQ5|M0TNQ5_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P08520_001} |
| TAIR | AT4G24270 | 0 | EMBRYO DEFECTIVE 140 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000004 | 6526736 | 6605353 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017090
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00076.21 | RRM_1 | 681 | 748 | 4.10E-14 |
| PF05391.10 | Lsm_interact | 814 | 829 | 4.10E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006396 | Biological Process | RNA processing |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 49.860 |
| SRR2545915 | Juvenile tuber | 46.010 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 26.430 |
| SRR5643514 | five period of Gastrodia elata | 28.780 | |
| SRR5643515 | five period of Gastrodia elata | 24.410 | |
| SRR5643524 | five period of Gastrodia elata | 23.950 | |
| SRR5643525 | five period of Gastrodia elata | 15.350 | |
| SRR5643528 | five period of Gastrodia elata | 13.890 | |
| SRR5643658 | five period of Gastrodia elata | 17.550 | |
| SRR5643659 | five period of Gastrodia elata | 31.560 | |
| SRR5643660 | five period of Gastrodia elata | 32.980 | |
| SRR5643661 | five period of Gastrodia elata | 28.140 | |
| SRR5643662 | five period of Gastrodia elata | 29.820 | |
| SRR5643663 | five period of Gastrodia elata | 33.900 | |
| SRR5643664 | five period of Gastrodia elata | 31.180 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 30.380 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 20.210 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 25.290 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 29.960 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 27.130 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 31.990 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 30.910 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 27.670 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 33.230 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 30.740 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 27.350 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 27.350 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 16.19 |
| Juven | Juvenile tuber | 24.05 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.39 | |
| Mother_Juven | Mother tuber of Juvenile | 13.47 |