Gene detail

Detail information of GWHGAAEX017100/evm.TU.scaffold_8.163

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG3026	7.00E-130	Splicing factor SPF30
nr	gi\|719988472\|ref\|XP_010252343.1\|	1.49E-157	PREDICTED: survival of motor neuron-related-splicing factor 30 [Nelumbo nucifera]
trEMBL	tr\|M0S0J8\|M0S0J8_MUSAM	2.00E-157	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P16900_001}
TAIR	AT2G02570	7.00E-130	nucleic acid binding;RNA binding

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000004	6844813	6861608	+

Transcript Sequence
>GWHTAAEX017100 AAGTACTGTAAATGCAAGTCATCCATCCGTTTTAGGGGAGAGAGCTCTTGATCACCGTTAATTGTTGGGGAGTCTCTCTCCGTATCCCCCTCCCTCTCTACTACTATCTCGCTCTTTGGATGTTTTGTTCGTACTACTAGGGAGAAATTTGAAGAAATCAGAGGAAACGAGAAAGATGCAAGGAGGGGATGATCTGAGCATCGAAGAGCTCGCTTCGAATCTCTCAACCTATCAGGAGCAGCTCGATGAGGTGAAAAAACTTTTGGCTGATGATCCTGGCAACTCAGAGTATGCAGATATGGAGAAAGAGCTTATTGAGGTTATCGCACTGACCGAAGAACTCTTGATTACCACAAAACAACCTGACTATTCCAGGGGTGCCACTGAGTTGGAAGCATATGCTTCCCCTTCTAAGGGCACCTCTCAGTCAAAAGCTGGTTTAAATGGACTTACTGAACAACGTATCGAAGGATTTCACAAGTTTTCTGTTGGCACCAAAGTTCAGGCTGTTTGGAGTGAAGATGGGGAGTGGTATGATGCAACTATTGAGGCTTTCACTCCCAATGGATTTATCGTTTGCTATGATGGATGGGGGAATAAGGAAGAGGTGGATCCCTATAATGTCAGGCCAATTGAAGTACAAGTGAATGCTTTGCTTGAAGCAGAAAGACAGGCCGAAGCAACAAAACAAGCTATTAAAAGAAAGATTGCACAAGCTGCTGTAGTGGACCTCCAGCAACGTATGATACCTCAAAAACTGCGCATTGAACCCACTGACCCTGAAGATGTGAAAGCTGCTAAGCGCAAGAAAATTCATGCGTTCAAGTCAAAAGCTCGTATTGAGCAACTTGAGGTTGTGCAGAATAAGAGGCAGAATTCTTGGCAACAATTTCAATCTTCAAAAGGGAAAACTAAAAAGATTGGATTTTTCTCGGGACGCAAACGGGAAAGCATATTCAAATCTCCTGACGATCCAACGGGCAAAGTGGGGGTGACGGGCAGCGGAAAGGGGCTGACGGAATTCCAGAAGAGAGAGAAGCATCTCCATCTCAAGGGTGCCGCCGCAGATGCTGAAGACGGGCTCTGATCTCTCTATTAATTATGTTGGTAGTAAATCTTGAGTTTATTGAAGCAGATGCTTTTATGAGATCAGCTCCGAGCTTTCTGGCCTTCTTTTTTATGAAATAGTTGTTTTATGCTGAACAGTTTGTTAACACAAGATTTAATAGGTTTATTTTTTGATGATCCAAGAATGGTGCTACCATATTTGTACAAGTCTGATGGGGCTCTCTTTGGAATGTATTATTTTTTTGGATCAAGTTGATATGCATTTGGTTAAAATGTCCTCTGGCTAGCAGCTTGATATTATTGTTATAACAATACATGACTGATATTCATATTTACTAGTTAAGATTTGTCCAATTTAATTCC

Network for GWHGAAEX017100

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06003.11	SMN	101	156	8.30E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12839	SMNDC1, SPF30	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0006397	Biological Process	mRNA processing
GO:0003723	Molecular Function	RNA binding
GO:0005737	Cellular Component	cytoplasm
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	47.070
SRP064423	SRR2545915	Juvenile tuber	31.120
SRP108465	SRR5643513	five period of Gastrodia elata	30.130
	SRR5643514	five period of Gastrodia elata	23.120
	SRR5643515	five period of Gastrodia elata	24.090
	SRR5643524	five period of Gastrodia elata	24.340
	SRR5643525	five period of Gastrodia elata	40.340
	SRR5643528	five period of Gastrodia elata	33.690
	SRR5643658	five period of Gastrodia elata	35.670
	SRR5643659	five period of Gastrodia elata	25.010
	SRR5643660	five period of Gastrodia elata	31.520
	SRR5643661	five period of Gastrodia elata	26.790
	SRR5643662	five period of Gastrodia elata	27.800
	SRR5643663	five period of Gastrodia elata	27.960
	SRR5643664	five period of Gastrodia elata	28.310
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	31.790
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	36.000
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	26.430
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	35.020
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	37.700
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	37.350
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	33.180
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	33.240
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	25.930
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	29.370
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	29.310
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	29.310
SRP279888	Gastro	Gastrodia elata tuber	38.18
	Juven	Juvenile tuber	49.45
	Mother_Gastro	Mother tuber of Gastrodia elata	46.65
	Mother_Juven	Mother tuber of Juvenile	48.02