Gene detail

Detail information of GWHGAAEX017103/evm.TU.scaffold_8.167

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1237	H+/oligopeptide symporter
nr	gi\|702253769\|ref\|XP_010068667.1\|	PREDICTED: protein NRT1/ PTR FAMILY 5.2-like [Eucalyptus grandis]
Swissprot	tr\|Q9FNL7\|PTR3_ARATH	Protein NRT1/ PTR FAMILY 5.2
trEMBL	tr\|B9SKP9\|B9SKP9_RICCO	Oligopeptide transporter, putative {ECO:0000313\|EMBL:EEF35846.1}
TAIR	AT5G46050	peptide transporter 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000004	7032936	7088817	+

Transcript Sequence
>GWHTAAEX017103 GTGCGAGTCCCATTATTTCCATATAAATAAGAAGGGGCAGAGAGCAGTGGGTCATAAGGCTATGGAGGATGCAGAGAGAGGCGGTGAGAGAGGGCATGAGGACGACGACAAATACACAAAGGACGGAACCGTCGATCTGAAAGGCCGCTCGTTTCTCCGCTGCAAAGGAGGCCGCTGGCCTGCCAGCTTCTTCATTCTCGCATCGGACGCTTTGGGAAGAATGGCGTACTATGCAGTGGCGTCAAATCTTGTTCAATACCTCACTAACGTGCTCCATCAGGGAACTGTAACTTCAGCAAACAGCGTAAACAATTGGGCGGGAACTGCATTTACGGCATCCATCTTGACTGCATATATTGCGGATTCATATCTTGGACGCTACAGAACTATCATATTGTCCTCTTCGATCTACTTCTTGGGGATGTGCCTCTTGACAGCAACAACTTATTTTCCGGCACTTCGCCCGCCTCCCTGCGATTACTCATTGAGTAATAAAGAAGACTGCAAGAGACTTACAAAAGGTTTTCAATTAGCCCTCTTCTATTGTGCACTGTACATCATAGCTATTGGTGTATCAGGAGTGAATGGCAACATTGCGGCCATTGGGGCAGAGCAGTTTGATAGATTTGAACCCGAAGAAAAATCCCAAAAAATATCATTCTTCAATTGGTGGGTCTTTGTAATCTCTATTGGGAACCTCTTTGCCACCACTGTGCTCATCTATATTCAGACTGCGAAGAGTTGGTCACTTAGTTATATGATATCCGCTTCAGCATTGGCCATTTCCATGCTTGTCTTCATTGCCGGAACTCCAATGTACCATCACAAAGTGCCTTCTTGTAGTCCTTTCACAGAGATAGCTCAAGTCTTTGTGGCAGCAGCAAGAAAATGCAAAGTGTCCCTTCCTAAGGATTCTAAAGATTTGCATGAACTCGGCTCTGAGCACTACTCGTTAAAAAAGCAGATAAAAATCAGTCACACAACTTCTCTGAGATTGTTAGACAAATCTGCTGTGAAGACGGACAAAAATGGTAAATGGATGTTGTGCCCAGTGACTCAAGTGGAGGAAACTAAACAATTCATAAAATTGTTACCCATCTTCATTGTTACAATCATGCCAAGTGTGATGCTGGCTCAAGTGCTCACTCTGTTTATAAAACAAGGCAACACTTTAAATCAAAGATTAAGTCCCCACTTCAGCATAGCTCCGGCGAGCCTCACAACAGTCAATCTCCTCTCAACCATTATAGGCGCCGCAATATACGACCGTTTACTGATGCCGTTCGCACGAAAGCACACAGGAAATACTCGCGGCTTCACATCCTTGCAGAGGATTGGCATTGGATTAGCTATGCATGTCATCATCATGATGGAGGCATCATTAGTAGAGAGATGGAGGCTGAGTAGAGTCATTGCTGAGAACTCAAAGGTTCCTCTGACTATTTTTATTCTTGTGCCGCAGTATTCACTAATGGGGGTGGCAGAAGTGTTTGCAGCAGTTGGAAAGATTGAATTTTTCCATGATCAAGCGCCAGAAGGAATGAAGAGTTTGGGAGCTTCGTTCTTCAGTGCAAGTGTAGGTATTGGGAATTTTTTCAGTAGTTTTCTTCTTTCGACAGTGTCGAGGATCACAAGGGGGTTCGATACAAATGGATGGATTCAAGATAATTTGAATGCTTCTCATCTAGATTACTATTATTGGTTCTTAGCTTTGATGAATGCAGTAAATCTTACTGCTTTCCTTATTATTTCGAAGTCTTACGTTTATAGAAGTGACAGTGTGAATTTTACCGCGAAAGATGATGCCACCAAAGAAAGCGCTAAAAGCGTTGGCTTCTGAGAGTTGGGAACTTTGCTATTTTGAGTAATTAGTCAATGTGA

Network for GWHGAAEX017103

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00854.20	PTR2	107	532	1.10E-92

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0022857	Molecular Function	transmembrane transporter activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.410
SRP064423	SRR2545915	Juvenile tuber	0.460
SRP108465	SRR5643513	five period of Gastrodia elata	0.040
	SRR5643514	five period of Gastrodia elata	5.320
	SRR5643515	five period of Gastrodia elata	1.340
	SRR5643524	five period of Gastrodia elata	3.190
	SRR5643525	five period of Gastrodia elata	0.360
	SRR5643528	five period of Gastrodia elata	0.170
	SRR5643658	five period of Gastrodia elata	0.160
	SRR5643659	five period of Gastrodia elata	1.830
	SRR5643660	five period of Gastrodia elata	0.230
	SRR5643661	five period of Gastrodia elata	0.270
	SRR5643662	five period of Gastrodia elata	3.870
	SRR5643663	five period of Gastrodia elata	1.350
	SRR5643664	five period of Gastrodia elata	0.800
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.330
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.330
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.470
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.410
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.300
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.990
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.100
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.280
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.290
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.300
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.670
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.670
SRP279888	Gastro	Gastrodia elata tuber	0.48
	Juven	Juvenile tuber	18.25
	Mother_Gastro	Mother tuber of Gastrodia elata	0.00
	Mother_Juven	Mother tuber of Juvenile	1.84