Gene detail

Detail information of GWHGAAEX017105/evm.TU.scaffold_8.170

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|672181349\|ref\|XP_008810891.1\|	PREDICTED: transcriptional corepressor SEUSS isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q8W234\|SEUSS_ARATH	Transcriptional corepressor SEUSS
trEMBL	tr\|M0RIN7\|M0RIN7_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P16120_001}
TAIR	AT1G43850	SEUSS transcriptional co-regulator

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000004	7169856	7209580	-

Transcript Sequence
>GWHTAAEX017105 ATGGTTCCATCAGGACCGCCCAATGGAGTTGGAAGTGCCCAACCCATGCCTTCCACTCTTCTGCGAACAAATTCAGGTTTGCTAGGAGGGCAGCCAGGTTCCATCCCATCTCAGCAGCCTTTCTCTTCATTGGTTTCCCCTCGAGCACAATTTAATGGCGTTCCCAATGGTAACACTATGGCATTGCTTGGCGGCATTTCGAATGTATCTTCTCTTCTCAACCATTCTTTTGGAAATGGAGTGGCCGGTTCTATTGGTGGGATTTCTGCCCAGCAAATGAATTCTCAGCAGCGAAGTATAAGCAGCAGCTCTTTGGATATGCTCAGTTCTGCGGAGCCCGATCCTCTCTCATTTTCTTCGCCAACTATCTCATTACCGGGGCAGCATATGCAAAATACTTCAGGGAACCAGATGGGGGCCGATCATTCTCATTCTCAGCAGCAACAGCTTGAAGTGGCCCAGAACTTCCAGCAGCAGCTCTCTGTTCCTCACAGCCAGCATCAGCAGCAGCAACTACGAGGAGGGCTTGGAAATGTTGGTGGTATGCCCCAGGTTAAGTTGGAGACCCAAATTGGGTCCAGTGATCAGAGTGTTACGGGGCAGCAATTGCAGACCATGCGGGGTATTGGTCCTGTTAAAATAGAGCCACAACAGCTACAATCTGTGCGAAGCTTAGGTCCAGTGAAGTTGGAACATCAGCATTCAGATTCTTCACTATTTTTGCAACAACATCAACAACAACATCAACAGCAGCATTCCCAGCAGCAATTGTTGCAAATGTCAAGATCATCACCACATGCTGCTAGTGCTGCTGCGCAAATGAACCTTTTGCAGCAGCAGCGGTTATTGCAACTCCAACAACAGCAGCAGCAACAACTTTTTAAGTCGCTCCCCCAAAGAGCACAACTGCAACAGCAGCTCCAACATGGTCTTCCAATCAGGCCTCAAATGAAAGCGACCATATATGAACCTGGGATGTGTGCAAGGCGTTTGACTCAGTACATGTATCGCCAACAACGCAGGCCCGAAGATAACAATATTGAATTTTGGAGGAAGTTTGTAACAGAATTCTTTGCTCCAAATGCAAAGAAGAGATGGTGTGTTTCTCTTTATGGAAGTGGCCGCCAGACTACTGGTGTTTTCCCACAGGATGTGTGGCATTGTGAATTATGCAACCGTAAGCCTGGTCGTGGTTTTGAAGCAACTGTTGAGGTTTTACCAAGGTTATTGCAAATTAAATATGCCAGTGGAACTTTGGAGGAGCTTCTTTATGTTGATATGCCTCGTGAATCTCAGAATACATCAGGCCAGATTGTCCTAGACTATGCTAAAGCTGTCCAAGAGAGTGTGTTTGAACAATTACGTGTTGTGCGTGACGGACAACTACGAATTGTTTTCAATCCTGATCTAAAGATATCCTCATGGGAGTTTTGTGCTAGAAGGCATGAGGAACTTATCCCACGAAAATTGATAATTCCTCAGGTCAGTCATCTTGGTAGTGTTGTTCAGAAGTATCAAACTGCTTCCCAAAACTCATCGTCTGGCCTCTCTTTGCAAGACCTTCAAAATACGTGTAATTCTTTTGTGGCTTCTGCTCGCCAATTGGCTAAAGCATTGGAGGTTCCTTTAGTTAATGACCTTGGATATACAAAAAGATATGTACGTTGTCTTCAGATTTCTGAGGTGGTAAATAGTATGAAGGATCTGATTGATTATAGCAGGGATACTGGAACTGGACCTATGGATAGCTTGATCAACTTTCCTAAAAGGAATTCTTCTTCACCTGGCCTGCATTCTCAACAACCTCAGTCACAAGGCACTCAAAACATAGCACAAAGCTCTAACCAAAACGAGCAAAATTCTTTGAATTCTCATGGAACCAGCAACAATGGTGCTGCAATTGTTAATAATCCTCTTAACCCACAATCATTGGCCTCAACATCTGGAACGTCCATTGTCAGCCTTCTCCATCAGAATTCCATGAACTCAAGGCAAGGAAACTTACTGAATAGCTCCAATAGCATATATGGTGGCGGGAACCATAACCAAATCCCATCAGCCAGCTCTTCCAATTCAATACCCTCTTCTCAACCCAATCCACCATCTCCTTTTCCTCCAACTCCGACTTCCAATGACACAATGATTCCACCAACAGCTCATAATCCTCATTTAAACACTATCACGTTATCGTCATCAATGCAGCAACAGACGAACCAATCCCGCGAATCCGATCTAACTGATTCACAGAGTTCGGTTCAGCAAATACTGCACGAAATTATGATGTCTTCCCAGCTAAATGGCGTTAACTCAATGGGAAACGAGATGAAGGGCATAAATGGAGGCAACTGCTTGGTCGGGAATGGCATTACTAACAGCCTTACCGGTAGTTCTGGCATGGGCGGCATCGGGTTTGGTGTTATGGGCGGGATCGGTGTCCCATCGGTCGCTTCGAGCGGGTTAAGAGCAACTTTGGCTAGTAATAGGGTTGGCATGAATCTCGTTTCTCAGGACTCATCGGCCATAAGCAGTCAGCAACAGCAGGATATGGAGAACCGGCTGCTGGGCGGACTCGGGTCAGTTAACAGCTTCAATAACTTGCAATTTGACTGGAAGCCCTCCCCCTGA

Network for GWHGAAEX017105

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01803.15	LIM_bind	330	584	7.80E-60

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	57.260
SRP064423	SRR2545915	Juvenile tuber	36.590
SRP108465	SRR5643513	five period of Gastrodia elata	34.040
	SRR5643514	five period of Gastrodia elata	31.150
	SRR5643515	five period of Gastrodia elata	34.840
	SRR5643524	five period of Gastrodia elata	32.400
	SRR5643525	five period of Gastrodia elata	50.070
	SRR5643528	five period of Gastrodia elata	42.470
	SRR5643658	five period of Gastrodia elata	44.480
	SRR5643659	five period of Gastrodia elata	24.790
	SRR5643660	five period of Gastrodia elata	29.920
	SRR5643661	five period of Gastrodia elata	26.730
	SRR5643662	five period of Gastrodia elata	27.760
	SRR5643663	five period of Gastrodia elata	28.020
	SRR5643664	five period of Gastrodia elata	29.950
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	33.430
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	31.670
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	28.350
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	39.770
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	44.090
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	48.890
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	41.630
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	43.010
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	29.550
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	37.310
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	29.730
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	29.730
SRP279888	Gastro	Gastrodia elata tuber	28.09
	Juven	Juvenile tuber	40.33
	Mother_Gastro	Mother tuber of Gastrodia elata	46.51
	Mother_Juven	Mother tuber of Juvenile	50.90