Gene detail

Detail information of GWHGAAEX017108/evm.TU.scaffold_8.174

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|410693254\|ref\|YP_003623875.1\|	1.00E-65	Amino-acid acetyltransferase (N-acetylglutamate synthase) (AGS) (NAGS) [Thiomonas arsenitoxydans]
KOG	KOG2436	3.00E-175	Acetylglutamate kinase/acetylglutamate synthase
nr	gi\|743790393\|ref\|XP_010923155.1\|	0	PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic [Elaeis guineensis]
Swissprot	tr\|Q84JF4\|NAGS1_ARATH	0	Probable amino-acid acetyltransferase NAGS1, chloroplastic (Precursor)
trEMBL	tr\|U5DB18\|U5DB18_AMBTC	0	Uncharacterized protein {ECO:0000313\|EMBL:ERN18612.1}
TAIR	AT4G37670	3.00E-175	N-acetyl-l-glutamate synthase 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000004	7284875	7332795	+

Transcript Sequence
>GWHTAAEX017108 ATGGCTACTTCTTCGTTGTTTACGAAGACATCTACAGGCGCGCGCTTCACCTGTTTGCATTCAAAGAAGATCAATCGCTTTCTGCCCGCTCTTTTTCGAATTGCTTCTGTGGGCTGCTTATCGAAACGAAGGGATCATCTCTCAGTCAGCTGTAGCTCCGACTGGAGCACAGTGAACTGTTCCGTTGGCGAGCAGTTGGATAAAGACAACGAGAAGTTTGTGGATTGGTTCCGGCAATCCTGGCCGTACATAAAGGGACACAGGGGGAGTATTTTTGTTGTTGTAATTTCTGGGGAAATTGTGGATAGTCCTTATTTGGACAGTATTCTCCAGGACATCTCGCTTCTCCATGGTCTAGGAATCAAATTTGTACTTCTTCCAGGCACTCATATCCAAATCGATAGACTATTAGCTGAGAGAGGAAACAAGGCCAAGTATGTTGGACGGTATTGCATAACAGATTCTGATTCATTGGAGGCATCAATGGAGGCAGCTGGACGAATTCGCCTTACAATAGAAGCAAAGCTTTCTCCTGGGCCACCCCTTTTAAATCTTCGCCGACATGGTGATAATCGTCGCTGGCATGAAGTGGGAGTTAGTGTTGTTGGTGGTAATTTTCTTGCAGCCAAGAGAAGGGGAGTTGTTGAAGGAATTGATTATGGAGCCACTGGTGAAGTAAAAAGAATAGATGTCTCTCGAATTCAAGAAAGGCTGGATGGAGATTGTATTGTCATTTTAAGCAATCTTGGCTATTCCAGTGCCGGAGAAGTTTTAAACTGCAACACTTATGAAGTTGCCACCGCCTGTGCATTAGCTATCAAGGCTGATAAGTTGATCTGCATTGTAGATGGGCATATTCATGATGATCATGGCCGGCTTATTCGTTTCTTGACTCTTCAAGATGCAGATAAGTTGATCAGACAACAAGCTAAGCAGAGTGAAATTGCTGCAAACTATGTTGAAGCTGTTGGTGAAGAAAATATTAGCCGTGCTGGTTATCATGATTCAACTAGAGTACCCTCTACTCCATTGGATGCCGCAGATAGCACTAGGCACAGCGCAAAGTTTCAGAATGGTGTTGGTTTTGACAATGGAAATGGTATTTTTCAGGGATTTGCCATCAGAGGTGAAGAGAGAGTGAGGAGGTTGAATGGATGTTTATCAGAATTAGCTGCTGCAGCATATGTGTGCAGGGGTGGAGTTCAAAGGGTACACGTAATAGATGGCACTCTTGGTGGTGCTTTGCTTTTGGAGTTATTTACAAGGGATGGAGTTGGGACTATGGTGGCTAGCGATGTCTATGAGGGAACTCGGACAGCTAGAGTTGAAGATCTTCCAGGCATACAACAACTTCTTCAACCATTAGAAGAATCTGGAATATTGGTTAAGAGGAACAATGATGAGTGTATTTGGACAGATGGCGTTGATAATCTGAATGCGTTTAATCTAAAAAAAGCACCATTGTAATAGGAAAATACATAATGCAGGGCTTTCAGGAGGAGCAACTTAAGCAAACCATCTTTAACTTTTGATATTTATAGCCTGCAGAAAATTCTCCAACTTTTGATGGTTTGTGATGATCTTGTTAAATGTTTTGTGAACTGTTTTACTGAAATGTAGTAAAAGATATTACATCAACTACAGCACTACCTGTTAATTGTGAATTGTATGTTGTAGAGAGAATGACGTTAAGCTAGTCCTCAGCACTATTACATAATAAGTTAT

Network for GWHGAAEX017108

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00696.27	AA_kinase	91	307	1.70E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14682	argAB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of antibiotics	map01130
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		Arginine biosynthesis	map00220

Gene Ontology

GO term	Ontology	Name
GO:0006526	Biological Process	arginine biosynthetic process
GO:0004042	Molecular Function	acetyl-CoA:L-glutamate N-acetyltransferase activity
GO:0005737	Cellular Component	cytoplasm

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.530
SRP064423	SRR2545915	Juvenile tuber	7.110
SRP108465	SRR5643513	five period of Gastrodia elata	3.730
	SRR5643514	five period of Gastrodia elata	4.420
	SRR5643515	five period of Gastrodia elata	4.040
	SRR5643524	five period of Gastrodia elata	5.260
	SRR5643525	five period of Gastrodia elata	4.440
	SRR5643528	five period of Gastrodia elata	3.530
	SRR5643658	five period of Gastrodia elata	4.140
	SRR5643659	five period of Gastrodia elata	3.360
	SRR5643660	five period of Gastrodia elata	3.070
	SRR5643661	five period of Gastrodia elata	2.790
	SRR5643662	five period of Gastrodia elata	2.820
	SRR5643663	five period of Gastrodia elata	3.240
	SRR5643664	five period of Gastrodia elata	2.890
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.090
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.690
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.060
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.840
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.690
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.630
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.240
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.820
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.480
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.940
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.290
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.290
SRP279888	Gastro	Gastrodia elata tuber	3.82
	Juven	Juvenile tuber	5.30
	Mother_Gastro	Mother tuber of Gastrodia elata	2.48
	Mother_Juven	Mother tuber of Juvenile	4.05