Detail information of GWHGAAEX017116/evm.TU.scaffold_8.185
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|116624736|ref|YP_826892.1| | 4.00E-47 | bifunctional folylpolyglutamate synthase/ dihydrofolate synthase [Candidatus Solibacter usitatus Ellin6076] |
| KOG | KOG2525 | 0 | Folylpolyglutamate synthase |
| nr | gi|743841464|ref|XP_010937529.1| | 0 | PREDICTED: folylpolyglutamate synthase isoform X1 [Elaeis guineensis] |
| Swissprot | tr|F4K2A1|FPGS1_ARATH | 0 | Folylpolyglutamate synthase {ECO:0000250|UniProtKB:Q05932, ECO:0000312|EMBL:CAC80839.2} |
| trEMBL | tr|M0TCI9|M0TCI9_MUSAM | 0 | Folylpolyglutamate synthase {ECO:0000256|PIRNR:PIRNR038895} |
| TAIR | AT5G05980 | 0 | DHFS-FPGS homolog B |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000004 | 7616003 | 7689044 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017116
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08245.11 | Mur_ligase_M | 121 | 276 | 1.00E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01930 | FPGS | Metabolic pathways | map01100 |
| Folate biosynthesis | map00790 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009058 | Biological Process | biosynthetic process |
| GO:0009396 | Biological Process | folic acid-containing compound biosynthetic process |
| GO:0016874 | Molecular Function | ligase activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004326 | Molecular Function | tetrahydrofolylpolyglutamate synthase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 60.700 |
| SRR2545915 | Juvenile tuber | 69.990 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 48.180 |
| SRR5643514 | five period of Gastrodia elata | 47.290 | |
| SRR5643515 | five period of Gastrodia elata | 47.170 | |
| SRR5643524 | five period of Gastrodia elata | 44.370 | |
| SRR5643525 | five period of Gastrodia elata | 72.660 | |
| SRR5643528 | five period of Gastrodia elata | 65.880 | |
| SRR5643658 | five period of Gastrodia elata | 89.240 | |
| SRR5643659 | five period of Gastrodia elata | 47.060 | |
| SRR5643660 | five period of Gastrodia elata | 55.390 | |
| SRR5643661 | five period of Gastrodia elata | 44.250 | |
| SRR5643662 | five period of Gastrodia elata | 61.920 | |
| SRR5643663 | five period of Gastrodia elata | 59.270 | |
| SRR5643664 | five period of Gastrodia elata | 63.170 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 59.950 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 48.160 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 58.530 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 71.160 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 62.490 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 67.080 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 64.200 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 55.150 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 47.980 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 51.390 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 53.690 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 53.690 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 49.43 |
| Juven | Juvenile tuber | 59.42 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 43.57 | |
| Mother_Juven | Mother tuber of Juvenile | 44.55 |