Detail information of GWHGAAEX017117/evm.TU.scaffold_8.188
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|327405195|ref|YP_004346033.1| | 4.00E-80 | farnesyl-diphosphate farnesyltransferase [Fluviicola taffensis DSM 16823] |
| KOG | KOG1459 | 0 | Squalene synthetase |
| nr | gi|475049601|gb|AGI56082.1| | 0 | squalene synthase [Dendrobium catenatum] |
| Swissprot | tr|P53799|FDFT_ARATH | 0 | Squalene synthase |
| trEMBL | tr|A0A075BHT4|A0A075BHT4_9ASPA | 0 | Squalene synthase {ECO:0000313|EMBL:AGI56082.1} |
| TAIR | AT4G34640 | 0 | squalene synthase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000004 | 7863489 | 7895732 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017117
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00494.18 | SQS_PSY | 44 | 315 | 1.40E-41 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009058 | Biological Process | biosynthetic process |
| GO:0008610 | Biological Process | lipid biosynthetic process |
| GO:0006696 | Biological Process | ergosterol biosynthetic process |
| GO:0004310 | Molecular Function | farnesyl-diphosphate farnesyltransferase activity |
| GO:0016765 | Molecular Function | transferase activity, transferring alkyl or aryl (other than methyl) groups |
| GO:0016740 | Molecular Function | transferase activity |
| GO:0051996 | Molecular Function | squalene synthase activity |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 39.670 |
| SRR2545915 | Juvenile tuber | 47.890 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 52.970 |
| SRR5643514 | five period of Gastrodia elata | 58.220 | |
| SRR5643515 | five period of Gastrodia elata | 55.430 | |
| SRR5643524 | five period of Gastrodia elata | 55.220 | |
| SRR5643525 | five period of Gastrodia elata | 78.420 | |
| SRR5643528 | five period of Gastrodia elata | 100.710 | |
| SRR5643658 | five period of Gastrodia elata | 90.250 | |
| SRR5643659 | five period of Gastrodia elata | 47.970 | |
| SRR5643660 | five period of Gastrodia elata | 56.210 | |
| SRR5643661 | five period of Gastrodia elata | 46.430 | |
| SRR5643662 | five period of Gastrodia elata | 61.260 | |
| SRR5643663 | five period of Gastrodia elata | 60.900 | |
| SRR5643664 | five period of Gastrodia elata | 70.290 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 47.610 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 54.230 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 52.270 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 42.610 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 39.150 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 38.050 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 40.860 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 36.860 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 47.950 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 42.580 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 59.960 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 59.960 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 72.23 |
| Juven | Juvenile tuber | 54.80 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 67.41 | |
| Mother_Juven | Mother tuber of Juvenile | 74.65 |