Detail information of GWHGAAEX017118/evm.TU.scaffold_8.189
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|511060169|ref|YP_008072054.1| | 1.00E-43 | 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1] |
| KOG | KOG0820 | 3.00E-111 | Ribosomal RNA adenine dimethylase |
| nr | gi|743864220|ref|XP_010943978.1| | 1.94E-123 | PREDICTED: LOW QUALITY PROTEIN: probable dimethyladenosine transferase [Elaeis guineensis] |
| trEMBL | tr|M0ZVZ9|M0ZVZ9_SOLTU | 5.00E-116 | Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400009305} |
| TAIR | AT5G66360 | 3.00E-111 | Ribosomal RNA adenine dimethylase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000004 | 7906848 | 7910189 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017118
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00398.19 | RrnaAD | 156 | 393 | 1.10E-57 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000154 | Biological Process | rRNA modification |
| GO:0006364 | Biological Process | rRNA processing |
| GO:0008649 | Molecular Function | rRNA methyltransferase activity |
| GO:0000179 | Molecular Function | rRNA (adenine-N6,N6-)-dimethyltransferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.090 |
| SRR2545915 | Juvenile tuber | 4.040 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.980 |
| SRR5643514 | five period of Gastrodia elata | 1.740 | |
| SRR5643515 | five period of Gastrodia elata | 2.720 | |
| SRR5643524 | five period of Gastrodia elata | 2.080 | |
| SRR5643525 | five period of Gastrodia elata | 2.490 | |
| SRR5643528 | five period of Gastrodia elata | 2.770 | |
| SRR5643658 | five period of Gastrodia elata | 3.280 | |
| SRR5643659 | five period of Gastrodia elata | 7.250 | |
| SRR5643660 | five period of Gastrodia elata | 8.580 | |
| SRR5643661 | five period of Gastrodia elata | 4.870 | |
| SRR5643662 | five period of Gastrodia elata | 5.920 | |
| SRR5643663 | five period of Gastrodia elata | 4.300 | |
| SRR5643664 | five period of Gastrodia elata | 6.710 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.610 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.520 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.090 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.480 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.340 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.300 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.610 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.890 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.400 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.710 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.220 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.220 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.16 |
| Juven | Juvenile tuber | 2.79 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.27 | |
| Mother_Juven | Mother tuber of Juvenile | 2.37 |